Locus 2323

Sequence ID 3R_DroMel_CAF1
Location 6,625,479 – 6,625,591
Length 112
Max. P 0.890342
window3759

overview

Window 9

Location 6,625,479 – 6,625,591
Length 112
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 80.36
Mean single sequence MFE -29.97
Consensus MFE -18.65
Energy contribution -17.89
Covariance contribution -0.76
Combinations/Pair 1.28
Mean z-score -2.34
Structure conservation index 0.62
SVM decision value 0.96
SVM RNA-class probability 0.890342
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6625479 112 + 27905053
UGAAGGGGUUUCAUCAAGUGAAGUUGACUUUUCUUUUUCUGAUGAAGGUUUUUCAUCAAGUGAAGUUGACUUUUCUUUUUCUGAUGAAGAUUUUUCAUCAAGUGAUGUUGAC
(((((((.((((((((((.(((((..(((((.((.....((((((((...)))))))))).)))))..))))).)).....)))))))).)))))))((((......)))). ( -30.80)
>DroSim_CAF1 18540 112 + 1
UAAAGGUUUUUCAUCAAGUGAAGUUGACUUGUCUUUUUCUGAUGAAGGUUUUUCAUCAAGUGAAGUUGAUUUUUCUUUUUCUGAGGAAGGCGGUUUUUCAAAUGAAGCAGAC
........((((((....(((((..((((.(((((((((((((((((...))))))))...((((..((....))..)))).)))))))))))))))))).))))))..... ( -26.20)
>DroEre_CAF1 18196 112 + 1
UGAAGGUGGGUUUUCAAGUGAAGUUGACCUUCCUUUUUCUGAUGAAAGCGCUUUUUCAAGUGAAAUUGGCUUUUCCUUUUCGGAUGAAGGCGGGUUUUCAAGUGAAGUUGAC
...........(((((..((((...(((((.(((((.(((((.((((((.(..((((....))))..))))))).....))))).))))).)))))))))..)))))..... ( -32.90)
>consensus
UGAAGGUGUUUCAUCAAGUGAAGUUGACUUUUCUUUUUCUGAUGAAGGUUUUUCAUCAAGUGAAGUUGACUUUUCUUUUUCUGAUGAAGGCGGUUUUUCAAGUGAAGUUGAC
...........(((((..(((((........((((..(((((((((.....)))))))...((((..((....))..)))).))..)))).....)))))..)))))..... (-18.65 = -17.89 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:37 2006