| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,602,299 – 6,602,397 |
| Length | 98 |
| Max. P | 0.686554 |
| Location | 6,602,299 – 6,602,397 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 83.99 |
| Mean single sequence MFE | -17.73 |
| Consensus MFE | -9.56 |
| Energy contribution | -10.62 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6602299 98 - 27905053 GUGUAGUAAUUCAUACAUAAGCCUAUUUCUAACAAUUUAAUAACUCUCACACAAUGGUUGUGGUGUACUCGUACUACACUGAAUACUACAUAUGUAUA ((((((((.....(((((.((((................................))))...)))))....))))))))...((((.......)))). ( -18.35) >DroSec_CAF1 7376 82 - 1 GUGUAGUAAUUCAUACAUAAACCUAUUUCUAACAAUUCAAUAACUCGCACACAAUGGUUGUG-UGU-----------ACUGAAUACUACAUA----UA ((((((((.((((((((((((((................................)))).))-)))-----------).)))))))))))).----.. ( -18.55) >DroSim_CAF1 8406 82 - 1 GUGUAGUAAUUCAUACAUAAACCUAUUUCUAACAAUUUAAUAACUCGCACACAAUGGUUGUG-UGU-----------ACUGAAUACUACAUA----UA ((((((((.((((((((((((((................................)))).))-)))-----------).)))))))))))).----.. ( -18.55) >DroEre_CAF1 7453 89 - 1 GUGUAGUAAUUCAUACAUAAACCUAUUUCUAACAAUUUAAUAACUCUCACACAAUGGUUGUA-UGUAAGCGUACUAUACUGAAUACUA--------UG ((((((((...(.((((((((((................................)))).))-)))).)..)))))))).........--------.. ( -15.45) >consensus GUGUAGUAAUUCAUACAUAAACCUAUUUCUAACAAUUUAAUAACUCGCACACAAUGGUUGUG_UGU___________ACUGAAUACUACAUA____UA ((((((((.((((((((..((((................................))))....))))............))))))))))))....... ( -9.56 = -10.62 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:31 2006