Locus 2316

Sequence ID 3R_DroMel_CAF1
Location 6,589,436 – 6,589,548
Length 112
Max. P 0.719630
window3743

overview

Window 3

Location 6,589,436 – 6,589,548
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 88.30
Mean single sequence MFE -36.34
Consensus MFE -26.84
Energy contribution -27.88
Covariance contribution 1.04
Combinations/Pair 1.18
Mean z-score -1.86
Structure conservation index 0.74
SVM decision value 0.40
SVM RNA-class probability 0.719630
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6589436 112 - 27905053
AUGGCUAAUGUGCUGCUCAGCGGAGGAUUCUCUUCUUGGCUAUCGCUUAAGGAGUUUUCUAUAUGGCUGACGCUUAAAGUCGCCUCGACUUCGCUACUCUUUAAAGUAGAGU
..(((......)))((((.((((((((....(((((((((....)).)))))))...)).....(((.(((.......))))))....))))))((((......)))))))) ( -32.00)
>DroSec_CAF1 1912 112 - 1
AUGGCUAAUGUGCUGCUCAGCGGAGGAUUCUCUUCUUGGCUAACGCUUAAGGAGUUUUCUGCCUGGCUGACGCUUAAAGUCGCCUCGACUUCGCUAAUGUUUAAAGUAAAGU
.((((....((((.(((..(((((((((((.(((...(((....))).))))))))))))))..))).).)))...((((((...)))))).))))................ ( -34.90)
>DroSim_CAF1 2589 112 - 1
AUGGCUAAUGUGCUGCUCAGCGGAGGAUUCUCUUCUUGGCUAACGCUUAAGGAGUUUUCUGCCUGGCUGAUGCUUAAAGUCGCCUCGACUUCGCUAACGUUUAAUGUAGAGU
.((((......((.(((..(((((((((((.(((...(((....))).))))))))))))))..)))....))...((((((...)))))).))))................ ( -33.30)
>DroEre_CAF1 2284 112 - 1
AUGGCCAAUGUGCUGCUCAGCGGCGGAUUCUCUACUUGGCUAACGCUUAAGGAGUUUUCUGCCUGGCUGACGCUCAAAGACGACUCCACUUGGCUAACACUUAAAGUAGAGU
.(((((((.(((..(((((((((((((..((((....(((....)))...))))...))))))..))))).))((......))...))))))))))..((((......)))) ( -38.80)
>DroYak_CAF1 2200 112 - 1
AUGUCUAAUGUGCUGCUCAGCGCCAGAUUCUCUACUUGGCUAACGCUUAGGGAGUUUUCCGCCUGGCUGGUGCUCAAAGACGACUCCACUUGGCUAACGCCCAAAGUAGAGU
.(((((...(..(((((..(((..((((((((((...(((....)))))))))))))..)))..))).))..)....)))))((((.(((((((....)))..)))).)))) ( -42.70)
>consensus
AUGGCUAAUGUGCUGCUCAGCGGAGGAUUCUCUUCUUGGCUAACGCUUAAGGAGUUUUCUGCCUGGCUGACGCUUAAAGUCGCCUCGACUUCGCUAACGUUUAAAGUAGAGU
.(((((...((((.(((..(((((((((((.(((...(((....))).))))))))))))))..))).).)))....))))).(((.((((.((....))...)))).))). (-26.84 = -27.88 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:22 2006