Locus 2313

Sequence ID 3R_DroMel_CAF1
Location 6,580,121 – 6,580,213
Length 92
Max. P 0.722503
window3737

overview

Window 7

Location 6,580,121 – 6,580,213
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 81.26
Mean single sequence MFE -23.10
Consensus MFE -13.64
Energy contribution -14.37
Covariance contribution 0.72
Combinations/Pair 1.18
Mean z-score -2.18
Structure conservation index 0.59
SVM decision value 0.40
SVM RNA-class probability 0.722503
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6580121 92 - 27905053
GCCUAUGUUCUCCAGUCCCUACUUGGCCAUUUCACUGCAGGUUUAUUGCCUGCAUUUCUGCCAGAUUAUGUGGUAGGUAUCUUUGGUAUCUU
...........((((..((((((((((........(((((((.....))))))).....))))........)))))).....))))...... ( -22.82)
>DroSec_CAF1 57056 89 - 1
GCCUAUGUUUUCCAGUCCCUACUUGGCCAUUUCACUGCAGGUUUAUUGCCUGCAUUUCUGCCAGAUUAUGUGGUAAGUAUAUUAGGUAU---
((((((((((((((........(((((........(((((((.....))))))).....)))))......))).))).))).)))))..--- ( -21.96)
>DroSim_CAF1 57110 89 - 1
GCCUAUGUUCUCCAGUCCCUACUUGGCCAUUUCACUGCAGGUUUAUUGCCUGCAUUUCUGCCAGAUUAUGUGGUAGGUAUAUUAGGUAU---
((((((((((((((........(((((........(((((((.....))))))).....)))))......))).))).))).)))))..--- ( -24.06)
>DroEre_CAF1 60768 89 - 1
GCCUAUGUUUUCCAAUCCCUAUUUGGCCAUUUCACUGCAGGUGUAUUGCCUGCACUUCUGCCAGAUUAUGUGGUAAGUAUAUCUGAAAU---
...(((((((.(((......(((((((........(((((((.....))))))).....)))))))....))).)))))))........--- ( -22.42)
>DroYak_CAF1 60302 89 - 1
GCCCAUGUUUUCCAAUCCCUAUUUGGCCAUUUCACUGCAGGUGUAUUGCCUGCAUUUCUGUCAGAUUAUGUGGUAGGUAAAUAUGGAAU---
..((((((((.((.(((.(.(((((((........(((((((.....))))))).....)))))))...).))).)).))))))))...--- ( -28.32)
>DroMoj_CAF1 105833 87 - 1
ACCAAUGUGCAAAUGCCCUUAUCUGGGAGUGUCUAUUCACGUUUAUCUGCUGCACUUUUGCCAAAUUAUGUGGUAAAUA--UUACAAAU---
......(((((....(((......))).(((......)))..........))))).(((((((.......)))))))..--........--- ( -19.00)
>consensus
GCCUAUGUUCUCCAGUCCCUACUUGGCCAUUUCACUGCAGGUUUAUUGCCUGCAUUUCUGCCAGAUUAUGUGGUAAGUAUAUUAGGAAU___
(((.....................)))........(((((((.....)))))))..(((((((.......)))))))............... (-13.64 = -14.37 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:16 2006