| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,576,048 – 6,576,144 |
| Length | 96 |
| Max. P | 0.994089 |
| Location | 6,576,048 – 6,576,144 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.57 |
| Mean single sequence MFE | -31.70 |
| Consensus MFE | -11.20 |
| Energy contribution | -13.42 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.35 |
| SVM decision value | 2.45 |
| SVM RNA-class probability | 0.994089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6576048 96 - 27905053 GCAUUUACGAAGAAAUUAAGA----------GU---CACCUUCCGGAAGAAAUCCGUCGAGCUCA--AUGGUUUCUAUGGCACCGCGUUAUUAAAUGUGGCAUAAGUGCAG----- (((((((((.((((((((.((----------((---.......((((.....))))....)))).--.)))))))).))...(((((((....)))))))..)))))))..----- ( -26.30) >DroSec_CAF1 52977 98 - 1 GCAUUUACGAAGAAAUUAAGA----------GU---CAGCUUCUGGGAGAAAUCCGUGGAGCUCAGAAUGGUUUCUAUGGCGCCGCGUUAUUAAAUGUGGCAUAAGUGCAG----- (((((((((.((((((((...----------.(---(((((((..(((....)))..))))))..)).)))))))).))..((((((((....)))))))).)))))))..----- ( -36.90) >DroSim_CAF1 53042 98 - 1 GCAUUUACGGAGAAAUUAAGA----------GU---CAGCUUCCGGGGGAAAUCCGUGGAGCUCAAAAUGGUUUCUAUGGUGCCGCGUUAUUAAAUGUGGCAUAAGUGCAG----- ((((((.((.((((((((...----------..---.((((((((((.....)))).)))))).....)))))))).))((((((((((....))))))))))))))))..----- ( -37.80) >DroYak_CAF1 56051 95 - 1 GCAUUUACGAAGAAAUUAAGA----------GU---CAGCUUCCGCUGGAAAUCCGUCGUG-UC--AAUGGUUUCUAGGGCGCUGCAUUAUUAAAUGUGGCAUAAGUGCAG----- (((((((..............----------..---......((.(((((((.((((....-..--.))))))))))))).((..((((....))))..)).)))))))..----- ( -27.40) >DroAna_CAF1 58982 104 - 1 ACUCUGCAGGAGCAAUUAAGGCAUGUGCAACGUCUCCAGGCUCUG----------GUCGACCGCA--AAGGUUUCUAUGGCGCUGUGGCAUUAAGUGAGCCACAAUUGCAGUAACA ...(((((((((........((....)).....))))..(((.((----------(..((((...--..)))).))).)))..((((((.........))))))..)))))..... ( -30.12) >consensus GCAUUUACGAAGAAAUUAAGA__________GU___CAGCUUCCGGGAGAAAUCCGUCGAGCUCA_AAUGGUUUCUAUGGCGCCGCGUUAUUAAAUGUGGCAUAAGUGCAG_____ (((((((...((((((((.........................((((.....))))..(....)....)))))))).....((((((((....)))))))).)))))))....... (-11.20 = -13.42 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:15 2006