Locus 2311

Sequence ID 3R_DroMel_CAF1
Location 6,573,254 – 6,573,344
Length 90
Max. P 0.584344
window3735

overview

Window 5

Location 6,573,254 – 6,573,344
Length 90
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 79.78
Mean single sequence MFE -31.72
Consensus MFE -20.08
Energy contribution -20.17
Covariance contribution 0.09
Combinations/Pair 1.30
Mean z-score -1.46
Structure conservation index 0.63
SVM decision value 0.10
SVM RNA-class probability 0.584344
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6573254 90 + 27905053
UUGUGUAUACGCAGCGUGGGCCGCCAACGCGCACUGAAGUGUGUGGACAAUGUGGGCAAAUCCCAUACGCGUGUAUGACGAAGGCG------AAGC
((((((((((((.(..((((..(((..(((((((....)))))))..(.....))))....))))..))))))))).)))).....------.... ( -32.10)
>DroSec_CAF1 50157 86 + 1
UUGCGUAUACGCAGCGUGGGCCGCCAACGCGCACUGAAGUGUGUGGACAAUGUAAGCAAAUCCCAUACGCGUGU----CGAAGGCG------AAGC
.((((....))))((....))((((..((.((((....((((((((....((....))....))))))))))))----))..))))------.... ( -28.00)
>DroSim_CAF1 50195 86 + 1
UUGCGUAUACGCAGCGUGGGCCGCCAACGCGCACUGAAGUGUGUGGACAAUGUGGGCAAAUCCCAUACGCGUGU----CGAAGGCG------AAGC
.((((....))))((....))((((..(((((((....)))))))((((.((((((.....))))))....)))----)...))))------.... ( -33.70)
>DroEre_CAF1 53785 80 + 1
UUGCGUAUACGCCGCGUGGGACGCUGACGCGCACUGAAGUGUGUGGACAAUGUGAGCAAAUCCCAUACGCGUGG----CGA------------AGC
.........((((((((((((.(((.((((((((....)))))).......)).)))...))))....))))))----)).------------... ( -30.81)
>DroYak_CAF1 53155 92 + 1
UUGCGUAUCCGCAACGUGGGAUGCUGACGCGCACUGAAGUGUGUGGACAAUGUGGGCAAAUCCCAUACGCGUGG----CGAAGGCGAAAGCAAAGC
..((.....(((.(((((.........(((((((....))))))).....((((((.....))))))))))).)----))...((....))...)) ( -33.50)
>DroAna_CAF1 56502 75 + 1
UUGCGUAUACGCCGCGUGGGCUGCUCAUUCGCACUGAAGUGUGUG-----------CGAAGUCCGCACGCGUGG----CCGAGGGG------CAAC
((((.(....((((((((.((.(....(((((((........)))-----------))))..).)).)))))))----)....).)------))). ( -32.20)
>consensus
UUGCGUAUACGCAGCGUGGGCCGCCAACGCGCACUGAAGUGUGUGGACAAUGUGGGCAAAUCCCAUACGCGUGG____CGAAGGCG______AAGC
.......(((((...(((((..(((..(((((((....))))))).........)))....)))))..)))))....................... (-20.08 = -20.17 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:14 2006