Locus 2310

Sequence ID 3R_DroMel_CAF1
Location 6,572,592 – 6,572,682
Length 90
Max. P 0.809473
window3734

overview

Window 4

Location 6,572,592 – 6,572,682
Length 90
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 78.18
Mean single sequence MFE -30.35
Consensus MFE -18.77
Energy contribution -18.80
Covariance contribution 0.03
Combinations/Pair 1.31
Mean z-score -1.74
Structure conservation index 0.62
SVM decision value 0.64
SVM RNA-class probability 0.809473
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6572592 90 + 27905053
CCUACGAAAUGUCACAGUUCGUGGCGUCUCGAAGGGGUUCCUCAGCUAAACAAGUUGGCUACAU------------------------GAGCCA--CUUUUGUCUCGGCCAGAUAA
(((.(((.(((((((.....))))))).))).)))(((((...((((((.....))))))....------------------------))))).--...((((((.....)))))) ( -29.00)
>DroSec_CAF1 49498 90 + 1
CCUUCGAAAUGUCACAGUUCGUGGCGUCUCGAAGGGGUUCCUCAGCUAAACAAGCUGGCUACAU------------------------GAGCCA--CUUUUGUCUCGGCCAGAUGA
(((((((.(((((((.....))))))).)))))))(((((.((((((.....))))))......------------------------))))).--...(..(((.....)))..) ( -32.50)
>DroSim_CAF1 49538 90 + 1
CCUUCGAAAUGUCACAGUUCGUGGCGUCUCGAAGGGGUUCCUCAGCUAAACAAGCUGGCUACAU------------------------GAGCCA--CUUUUCUCUGGGCCAGAUGA
(((((((.(((((((.....))))))).)))))))(((((...((((.....))))((((....------------------------.)))).--.........)))))...... ( -34.30)
>DroEre_CAF1 53124 90 + 1
CCUCCGGAAUGUCACAGUUCGUGGCGUCUCGAAGGGGUUCCUCAGCUAAACAAGCUGGCUACAU------------------------GAGCCA--CUUCUGUUUUGGCCAGAUAA
(((.((..(((((((.....)))))))..)).)))(((((.((((((.....))))))......------------------------))))).--..((((.......))))... ( -29.30)
>DroYak_CAF1 52491 90 + 1
UCUACGGAAUGUCACAGUUCGUGGCGUCUCGAAGGGUUUCCUCAGCUAAACAAGCUGGCUACAU------------------------GAGCCA--CUUUUGUCUUGGCCAGAUAA
(((.((..(((((((.....)))))))..)).))).........((((((((((.(((((....------------------------.)))))--..))))).)))))....... ( -26.80)
>DroAna_CAF1 55848 115 + 1
CAUCCGGAAUGUUACAGUUGAAGGCGCCUCAAAGGGUUU-CUUAGCUUUCUCAACUGCUCACACUAUUGGAUAAACUUUGGGGCCGUAGAGGCAGUCAUUCGGCAUGGCCAGAUAA
.(((.((.......((((((((((((((((..(.(((..-(..((.((..((((..(......)..))))..)).))..)..))).).))))).))).)))))).)).)).))).. ( -30.20)
>consensus
CCUACGAAAUGUCACAGUUCGUGGCGUCUCGAAGGGGUUCCUCAGCUAAACAAGCUGGCUACAU________________________GAGCCA__CUUUUGUCUUGGCCAGAUAA
(((.(((.(((((((.....))))))).))).))).........(((..(((((.(((((.............................)))))....)))))...)))....... (-18.77 = -18.80 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:13 2006