Locus 2309

Sequence ID 3R_DroMel_CAF1
Location 6,571,246 – 6,571,359
Length 113
Max. P 0.889463
window3733

overview

Window 3

Location 6,571,246 – 6,571,359
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 95.22
Mean single sequence MFE -29.99
Consensus MFE -24.50
Energy contribution -25.50
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.82
SVM decision value 0.96
SVM RNA-class probability 0.889463
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6571246 113 - 27905053
AACCGGAGAAAAGGCAACCAGAGAACCAGGCACAAAAUAUAUAGCUAGGGAAAUAAAGUAGCCGCAUGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA
............(((.((.......((.(((............))).))........)).)))(((((((.(((.....((((......)))))))..)))))))........ ( -28.76)
>DroSec_CAF1 48105 113 - 1
AACCGGAGACAAGGCAACCAGAGAAGCAGGCACAAAAUAUAUAGCUUGGGAAAUAAAGCAGCCGCAAGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA
((((((.(.(((.((((((...(((...(((............((((........))))...(....)...)))..))).)))))).))))))))))................ ( -32.90)
>DroSim_CAF1 48118 113 - 1
AACCGGAGACAAGGCAACCAGAGAAGCAGGCACAAAAUAUAUAGCUAGGGAAAUAAAGCAGCCGCAAGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA
((((((.(.(((.((((((...(((...(((............(((..........)))...(....)...)))..))).)))))).))))))))))................ ( -30.20)
>DroEre_CAF1 51696 111 - 1
AACCGGAG-CAAGGCAACCAGAGAACCAGGCACA-GAUAUAUAGCUAGGGAAAUAAAGUAGCCGCAAGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA
((((((.(-(((.((((((...(((...(((...-........((((...........))))(....)...)))..))).)))))).))))))))))................ ( -32.90)
>DroYak_CAF1 51061 112 - 1
AACCGGAGACACAGCAACCAGAGAACCAGACGCA-AAUAUAUAGCUAGGGAAAUAAAGUAGCCGCAAGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA
....(....)...(((......(((((....((.-........))..(((.(((...((((((.((((........))))))))))))).))))))))....)))........ ( -25.20)
>consensus
AACCGGAGACAAGGCAACCAGAGAACCAGGCACAAAAUAUAUAGCUAGGGAAAUAAAGUAGCCGCAAGACCGCCAAUUUGGGUUGCAUUGCCCGGUUCGUCAUGCAUAAAAUA
((((((.(.(((.((((((...(((...(((............((((...........))))(....)...)))..))).)))))).))))))))))................ (-24.50 = -25.50 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:12 2006