| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,567,335 – 6,567,438 |
| Length | 103 |
| Max. P | 0.842237 |
| Location | 6,567,335 – 6,567,438 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 93.92 |
| Mean single sequence MFE | -23.06 |
| Consensus MFE | -21.76 |
| Energy contribution | -22.07 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842237 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6567335 103 + 27905053 CUCAUGCUGCGAUGUCCUGCAGAGACAUUUGGCGAAAGAAAAGCAGGGGAUUAGAGGAAAAAAAAACUCGGGGAAACGAGAAAAUGGGAGAUGGCAAGGCAGA ......(((((((.((((((.....(....).(....)....)))))).)))..............((((......))))..................)))). ( -23.40) >DroSec_CAF1 44219 100 + 1 CUCAUGCUGCGAUGUCCUGCAGAGACAUUAGGCGUAAGAGAAGCAGGGGAUUAGAGGGAA---AAACUCGGGGAAACGAGAAAAUGGGAAAUGGCAAAGCAGA ......(((((((.((((((.....(....).(....)....)))))).)))........---...((((......))))..................)))). ( -22.30) >DroSim_CAF1 44198 100 + 1 CUCAUGCUGCGAUGUCCUGCAGAGACAUUUGGCAUAAGAGAAGCAGGGGAUUAGAGGGAA---AAACUCGGGGAAACGAGAAAAUGGGAAAUGGCAAAGCAGA ......(((((((.((((((......................)))))).)))........---...((((......))))..................)))). ( -21.55) >DroEre_CAF1 47454 100 + 1 CUCAUGCUGCGAUGUCCUGCAGAGACAUUUGGCGAAAGAGAAGCGGGGGAUUAGAGGGAA---AACCUCGGGGAAACGAGAAAAUGGGAAAUGGCAAAGCAGA ......(((((((.((((((.....(....).(....)....)))))).))).((((...---..))))..(....).....................)))). ( -25.00) >consensus CUCAUGCUGCGAUGUCCUGCAGAGACAUUUGGCGAAAGAGAAGCAGGGGAUUAGAGGGAA___AAACUCGGGGAAACGAGAAAAUGGGAAAUGGCAAAGCAGA ......(((((((.((((((.....(....).(....)....)))))).)))..............((((......))))..................)))). (-21.76 = -22.07 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:11 2006