Locus 2307

Sequence ID 3R_DroMel_CAF1
Location 6,565,565 – 6,565,660
Length 95
Max. P 0.647109
window3731

overview

Window 1

Location 6,565,565 – 6,565,660
Length 95
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 82.36
Mean single sequence MFE -27.42
Consensus MFE -13.95
Energy contribution -14.23
Covariance contribution 0.28
Combinations/Pair 1.33
Mean z-score -2.85
Structure conservation index 0.51
SVM decision value 0.24
SVM RNA-class probability 0.647109
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6565565 95 + 27905053
ACCUGUCUGUUU-ACCUGUACUUUUCCGACCAUUAAUAACACGG-CUAUGGCAACUGGUUGUG-GCAGACAGGUCAUAAUUUGACCAACAA---------UUAUGGC
((((((((((..-.......(......)...........(((((-(((.(....)))))))))-))))))))))(((((((........))---------))))).. ( -28.10)
>DroSec_CAF1 42401 96 + 1
ACCUGUCUGUUU-ACCCGUACUUUUCCGACCAUUAAUAACACGG-CUAUGGCAACUGGUUGUGGGCAGACAGGUCAUAAUUUGACCAACAA---------UUAUGGG
(((((((((((.-...((........))...........(((((-(((.(....))))))))))))))))))))(((((((........))---------))))).. ( -30.20)
>DroSim_CAF1 42396 95 + 1
ACCUGUCUGUUU-ACCCGUACUUUUCCGACCAUUAAUAACACGG-CUAUGGCAACUGGUUGUG-GCAGACAGGUCAUAAUUUGACCAACAA---------UUAUGGG
((((((((((..-...((........))...........(((((-(((.(....)))))))))-))))))))))(((((((........))---------))))).. ( -29.70)
>DroEre_CAF1 45641 95 + 1
ACCUGUCUGUUU-ACCUGUACUUUUCCAACCAUUAAUAACACGG-CCAUGGCAACUGGUUGUG-ACAGACAGGUCAUAAUUUGACCAACAA---------UUAUCAU
...(((((((..-...((........))...........(((((-(((.(....)))))))))-)))))))(((((.....))))).....---------....... ( -27.50)
>DroWil_CAF1 45030 102 + 1
GCCAUUCCGUUUUGGUGGCAAUUUUCAGGCCAUUAACAAUAGGGACAAUGGAAAAU----CUG-GUAGACAGGUAAUAAUUUGUCCAACCAGGCCAAAAUUCAAAAC
.(((((((.(.((((((((.........))))))))....).)))..))))....(----(((-((.(((((((....)))))))..)))))).............. ( -27.00)
>DroYak_CAF1 45083 95 + 1
ACCUGUCUGUUU-ACCCGUACUUUUCCGACCAUUAAUAACACGG-CUAUGGCAACUGGUUGUG-GCAGCCAGGUCAUAAUUUGACCAACAA---------UUAUCAU
...((.((((..-...((........))...........(((((-(((.(....)))))))))-)))).))(((((.....))))).....---------....... ( -22.00)
>consensus
ACCUGUCUGUUU_ACCCGUACUUUUCCGACCAUUAAUAACACGG_CUAUGGCAACUGGUUGUG_GCAGACAGGUCAUAAUUUGACCAACAA_________UUAUGAC
((((((((((.......((.........)).........(((((.(((.(....))))))))).))))))))))................................. (-13.95 = -14.23 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:10 2006