Locus 2306

Sequence ID 3R_DroMel_CAF1
Location 6,565,093 – 6,565,208
Length 115
Max. P 0.788899
window3730

overview

Window 0

Location 6,565,093 – 6,565,208
Length 115
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 75.67
Mean single sequence MFE -23.30
Consensus MFE -18.15
Energy contribution -18.15
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -0.97
Structure conservation index 0.78
SVM decision value 0.58
SVM RNA-class probability 0.788899
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6565093 115 - 27905053
ACAGUCUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCUAUGGCGGAUUAUGCGUAAGUUUAACAUUAUGCUAAGUGAAUUCUGAAUAUUUAUAACCAUAAAUUAAUCA
..((((((((....((.((((...((((.....)))))))).))...))))))))..((((((........))))))...((((((.......))))))................ ( -23.60)
>DroGri_CAF1 56577 92 - 1
ACAGUUUGCUUCAUGAUGUGGCCCGAUGGACGUUAUCCCACAUCAAUGGCGGACUAUGUGUAACUAUUUGUUUAUGUUC---------------UUUACCAACAUUG--------
..((((((((...((((((((...((((.....))))))))))))..))))))))(((((.(((.....))))))))..---------------.............-------- ( -21.80)
>DroSec_CAF1 41966 112 - 1
ACAGUCUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCAAUGGCGGACUAUGCGUAAGUUUAACACAAUGUUUAAUGAAUUUUGAAUUUUUAAAA---UAAAAUAAUCA
..((((((((...(((.((((...((((.....)))))))).)))..))))))))..((....))...................(((((((....))))))---).......... ( -23.00)
>DroSim_CAF1 41925 115 - 1
ACAGUCUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCUAUGGCGGAUUAUGCGUAAGUUUUACAUUAUGCCAAAUGAAUUUGGAAUUUUUACAAUAAUAAAUUAAUCA
..((((((((....((.((((...((((.....)))))))).))...))))))))..((((((........))))))......((((((..(((.....)))..))))))..... ( -22.50)
>DroEre_CAF1 45172 115 - 1
ACAGUUUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCUAUGGCGGAUUAUGCGUAAGUAUGAAAUUAUGCUGAAUGAAUUUUCAAAUUUUAGUAUAAUAAAUUAAUCG
....((((((....((.((((...((((.....)))))))).))...))))))((((((....)))))).((((((((((((((....)))...))))))))))).......... ( -27.30)
>DroYak_CAF1 44628 99 - 1
ACAGUUUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCUAUGGCGGAUUAUGCGUAAGUAUGAAAACAAGCAAUAUAAUUUUUGAAAUUGUAC----------------
....((((((....((.((((...((((.....)))))))).))...))))))((((((....))))))..((((.(((........)))...))))..---------------- ( -21.60)
>consensus
ACAGUCUGCUUCAUGAUGUGGCCAGAUGGACGAUAUCCCACUUCUAUGGCGGAUUAUGCGUAAGUAUAACAUUAUGCUAAAUGAAUUUUGAAUUUUUACAA__AUAAAUUAAUCA
..((((((((....((.((((...((((.....)))))))).))...))))))))..((((((........))))))...................................... (-18.15 = -18.15 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:09 2006