| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,559,059 – 6,559,150 |
| Length | 91 |
| Max. P | 0.664263 |
| Location | 6,559,059 – 6,559,150 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 77.80 |
| Mean single sequence MFE | -26.72 |
| Consensus MFE | -13.73 |
| Energy contribution | -13.51 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6559059 91 + 27905053 ---U-AGUGCCACA-AUUCCUGGUCACUGUGGCUGCCCC-AACCAAUUAGUCU---------GUUUGAUGUGGC-UCCACAUCGCAGACUGCCAACACUACACGCAC ---(-(((((((((-............))))))......-.......((((((---------((..((((((..-..)))))))))))))).....))))....... ( -28.10) >DroSec_CAF1 36065 95 + 1 UCUC-CGUGCCACA-AUUCCUGGUCGCUGUGGCUGCCCCGAACCAAUUAGUCU---------GUUUGAUGUGGC-UCCACAUCGCAGACUGCCAACACUACACGCAC ....-.((((....-.(((..(((.((....)).)))..))).....((((((---------((..((((((..-..))))))))))))))............)))) ( -29.40) >DroSim_CAF1 35917 95 + 1 UCUC-CGUGCCACA-AUUCCUGGUCGCUGUGGCUGCCCCGAACCAAUUAGUCU---------GUUUGAUGUGGC-UCCACAUCGCAGACUGCCAACACUACACGCAC ....-.((((....-.(((..(((.((....)).)))..))).....((((((---------((..((((((..-..))))))))))))))............)))) ( -29.40) >DroEre_CAF1 39171 95 + 1 UCUC-CGAGCUACU-UUUCCUGGUCGCUGUGGCUGCCAUAAACCAAUUAGUCU---------GUUUGAUGUUGC-UUCGCAUCCCAGAAUGGCAACACUGCUCCCAC ....-.........-.....(((..((.(((..((((((...........(((---------(...(((((...-...))))).)))))))))).))).))..))). ( -23.90) >DroYak_CAF1 37898 94 + 1 CCUC-CGUGCCACA-AUUCCUGGUCGCUGUGGCUGCCCC-AACCAAUUAGCCU---------GUUUGAUGUGGC-ACCACAUCGCAGACUGCCAACACUACUCGCAC ....-.((((....-.....((((.((((((((((....-.......))))).---------....((((((..-..)))))))))).).)))).........)))) ( -26.67) >DroAna_CAF1 42611 97 + 1 UCUCCCGACCCACAAAUUCCUGGCUGCUGUGGCUCCGCC-GACCAAUUAGUCUGUCGGCUCUGUUUGAUGUGGCAUCCACAUUCAUAUA---------UGUUGUUAG .((..(((((((((.............)))))....(((-(((..........))))))..(((.((((((((...))))).))).)))---------.))))..)) ( -22.82) >consensus UCUC_CGUGCCACA_AUUCCUGGUCGCUGUGGCUGCCCC_AACCAAUUAGUCU_________GUUUGAUGUGGC_UCCACAUCGCAGACUGCCAACACUACACGCAC ........(((((...............))))).................................(((((((...)))))))........................ (-13.73 = -13.51 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:08 2006