| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,545,203 – 6,545,312 |
| Length | 109 |
| Max. P | 0.609828 |
| Location | 6,545,203 – 6,545,312 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 82.08 |
| Mean single sequence MFE | -36.68 |
| Consensus MFE | -22.66 |
| Energy contribution | -23.58 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6545203 109 + 27905053 GAUACCUCGAAUAUGCUAUGCUGUUGUGGCUUAAUUGAUGGCCGGAUAGAUGGCACGCGUGCACGUAGUGCCAUUUCAGGGAUGUCGAUCCGGUCUCUUGUAGGCCAAC ..........................(((((((...((.((((((((((((((((((((....))).)))))))))((....))...))))))))))...))))))).. ( -38.60) >DroSec_CAF1 21998 108 + 1 GAUACUUCGAAUAUGCCAUGCUGUUGUGGCUUAAUUGAUGGCCGGAUAGAUGGCACGCGUGCACGUAGUGCCAU-CCAGUGAUGUCGAUCCGGUCUCUUGUUGGCCAAC ......((((.((.(((((......))))).)).)))).((((((((.(((((((((((....))).)))))))-)((....))...)))))))).............. ( -39.50) >DroSim_CAF1 21622 108 + 1 GAUACUUCGAAUAUGCCAUGCUGUUGUGGCUUAAUUGAUGGCCGGAUAGAUGGCACGCGUGGACGUAGCGCCAU-CCAGUGAUGUCGAUCCGGUCUCUUGUUGGCCAAC ......((((.((.(((((......))))).)).))))(((((((..(((.(((.((.((.(((((.((.....-...)).))))).)).))))))))..))))))).. ( -36.30) >DroEre_CAF1 24471 92 + 1 -GUACUUCAGAUAUGCCAUGCUGUUGUGGCUUAAUUGAUGGCCGGAUAGAUG---------G------UGGUAU-UCCGUGAUGCCAAUCCUGUCCUUUGCAGGCCAAC -.....((((.((.(((((......))))).)).))))(((((((((((...---------.------((((((-(....)))))))...))))))......))))).. ( -31.30) >DroYak_CAF1 22563 101 + 1 -AUACUUCAGAUAUGCCAUGCUGUUGUGGCUUAAUUGAUGGCCGGAUAGAUGGCACACGUGG------UGGUAG-CCCGUGAUGUCAGUCCUGUCUUUUGCAGGCCAAC -.....((((.((.(((((......))))).)).))))(((((((((((.(((((((((.((------(....)-)))))).)))))...))))))......))))).. ( -37.70) >consensus GAUACUUCGAAUAUGCCAUGCUGUUGUGGCUUAAUUGAUGGCCGGAUAGAUGGCACGCGUGGACGUAGUGCCAU_CCAGUGAUGUCGAUCCGGUCUCUUGUAGGCCAAC ......((((.((.(((((......))))).)).))))(((((((....((((((((((....))).))))))).)).(.(((....))))...........))))).. (-22.66 = -23.58 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:01 2006