Locus 230

Sequence ID 3R_DroMel_CAF1
Location 923,659 – 923,761
Length 102
Max. P 0.973036
window413

overview

Window 3

Location 923,659 – 923,761
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.27
Mean single sequence MFE -26.56
Consensus MFE -15.98
Energy contribution -15.78
Covariance contribution -0.20
Combinations/Pair 1.24
Mean z-score -2.09
Structure conservation index 0.60
SVM decision value 1.70
SVM RNA-class probability 0.973036
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 923659 102 + 27905053
UUUUCAUGAUGCAAAGCGACUAUCUGCGAGAUACCAAAAAGAGGCUCUCUGCACAACUCCCCGAGCGGAGAUCCAUCUCAUUAUUCCUCCCGUUUAUCAC------------------CA
......(((((....(((......)))(((((..(.....).((.(((((((.(........).))))))).)))))))...............))))).------------------.. ( -20.90)
>DroSec_CAF1 12658 101 + 1
UUUUCUUGAUGCAAAGCGAGUAUCUGCGAGAUACCGA-AAGAGGAUCUCUGCACAACUCCCCGAGCGGAGAUCCAUCUCAUUAUUCCUCCCGUUUAUCAC------------------CA
......(((((...((((.((....))(((((..(..-..).((((((((((.(........).)))))))))))))))...........))))))))).------------------.. ( -29.10)
>DroSim_CAF1 18548 101 + 1
UUUUCAUGAUGCAAAGCGAGUAUCUGCGAGAUACCGA-AAGAGGAUCUCUGCACAACUCCCCGAGCGGAGAUCCAUCUCAUUAUUCCUCCCGUUUAUCAC------------------CA
......(((((...((((.((....))(((((..(..-..).((((((((((.(........).)))))))))))))))...........))))))))).------------------.. ( -29.20)
>DroEre_CAF1 13771 108 + 1
UUUCCAUGGUGCACAGCGAGUAUCUACCAAAUACCAA-GGGAGGCUAUCUGUACAACUC-GCGAGCAGAUAUCCAUCCCUUCAUUCC---------UCGCCUUGUUUUCCC-GGACUCUA
..(((..((.(((..((((((((.......)))).((-((((((.(((((((.(.....-..).))))))).)).))))))......---------))))..)))...)).-)))..... ( -30.30)
>DroYak_CAF1 33454 117 + 1
UUUUCAUGGUGCAUAGUGAGUAUCUACCAAAUACCGA-GGGAAGCUAUCUGUACAACUC-CCGAGCAGAGAUCCAUCCCAUUAUUCUU-AAGUUUAUCACCUUGUUUUCCUUGAACUCGA
..((((.((.(((..((((((((.......))))...-((((.(...(((((.(.....-..).)))))....).)))).........-.......))))..)))...)).))))..... ( -23.30)
>consensus
UUUUCAUGAUGCAAAGCGAGUAUCUGCGAGAUACCGA_AAGAGGCUCUCUGCACAACUCCCCGAGCGGAGAUCCAUCUCAUUAUUCCUCCCGUUUAUCAC__________________CA
.....((((((......(.(((((.....))))))....(((((.(((((((.(........).))))))).)).))))))))).................................... (-15.98 = -15.78 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:15 2006