Locus 2297

Sequence ID 3R_DroMel_CAF1
Location 6,534,307 – 6,534,417
Length 110
Max. P 0.629649
window3713

overview

Window 3

Location 6,534,307 – 6,534,417
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.84
Mean single sequence MFE -32.43
Consensus MFE -21.52
Energy contribution -21.92
Covariance contribution 0.40
Combinations/Pair 1.32
Mean z-score -1.41
Structure conservation index 0.66
SVM decision value 0.20
SVM RNA-class probability 0.629649
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6534307 110 - 27905053
UAAUGGAACUAUCUACAUGGAUAGGAUGGAUCUCUCCACCUUCAACUGCAUCCUCUGGGAGCAAAUCAACGCAGCUGAAGGUCGAUCCGCCAUUUGGUUUCACAAGUAAU----------
...((((((((.....((((...(((((((....)))(((((((.((((.(((....)))(........))))).)))))))..)))).)))).))))))))........---------- ( -34.30)
>DroSec_CAF1 11351 110 - 1
UAAUGGAACUAUCUACAUGGAUAAGAUGGAUUUCUCCACCUUCAACUGCAUCCUCUGGGAGCAAAUCAACGCAGCUGAGGGUCGAUCCGCCAUUUGGUUUCAUAAGUAAG----------
..((((((((((((....)))).((((((.....((.(((((((.((((.(((....)))(........))))).))))))).))....)))))))))))))).......---------- ( -32.60)
>DroSim_CAF1 10068 110 - 1
UAAUGGAACUAUCUACAUGGAUAAGAUGGAUCCCUCCACCUUCAACUGCAUCCUCUGGGAGCAAAUCAACGCAGCUGAGGGUCGAUCCGCCAUUUGGUUUCAUAAGUAAG----------
..((((((((((((....)))).((((((.....((.(((((((.((((.(((....)))(........))))).))))))).))....)))))))))))))).......---------- ( -32.60)
>DroEre_CAF1 13418 119 - 1
GAAUGGCAUUAUCUACGUGGAUAAGAUGGAUCUCCCCACCUUCAACUGCAUUCUCUGGGAGCAAAUUAAUGUGGCUGAGGGUCGAUCCGCCAUUUGGUAUCACAAGUAAAGCUAUCCGU-
(((((((.((((((....))))))...(((((.....(((((((.(..((((...((....))....))))..).))))))).))))))))))))........................- ( -34.60)
>DroYak_CAF1 11474 120 - 1
GAACGGAACUAUAUACAUGGAUAAGAUGGAUCUCUCCACCUUUAAGUGCAACCUUUGGGAGCAAAUUAACGCGGCUGAGGGACGAUCCGCCAUUUGGUUUCACAAGUAAAGCUAUCUGUU
.((((((......(((.((((......(((((....(((......)))...((((..(..((........))..)..))))..)))))(((....))).)).)).)))......)))))) ( -27.60)
>DroAna_CAF1 17562 110 - 1
CAACGGGUGCAUCUACGUCGAUCGCAUGGACGUGUCCACAUUCCAAUGCGUCAACUGGGAGCUGAUCAACGCCGCAGAAGGUCGCUCGGCUCUUUGGUUCCACAAGUAAA----------
..((..(((..........((.((((((((.(((....)))))).)))))))(((..((((((((.(...(((......))).).))))))).)..))).)))..))...---------- ( -32.90)
>consensus
UAAUGGAACUAUCUACAUGGAUAAGAUGGAUCUCUCCACCUUCAACUGCAUCCUCUGGGAGCAAAUCAACGCAGCUGAGGGUCGAUCCGCCAUUUGGUUUCACAAGUAAA__________
....(((((((......(((((....((((....))))((((((.((((......((....)).......)))).))))))...))))).....)))))))................... (-21.52 = -21.92 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:53 2006