Locus 2295

Sequence ID 3R_DroMel_CAF1
Location 6,512,834 – 6,512,925
Length 91
Max. P 0.979825
window3709

overview

Window 9

Location 6,512,834 – 6,512,925
Length 91
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 71.37
Mean single sequence MFE -25.06
Consensus MFE -15.41
Energy contribution -16.38
Covariance contribution 0.97
Combinations/Pair 1.14
Mean z-score -1.96
Structure conservation index 0.61
SVM decision value 1.85
SVM RNA-class probability 0.979825
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6512834 91 + 27905053
CUAGUGCCAGGAUAAGUACAUCCUGCCGGGAAAAAUCCGAAUUAAAUCGGG-------GGCCUGUGCCCAAACACCCA--CGCUGCCAUACA-----------AAAUAAAC
.(((((.((((((......))))))..(((......((((......))))(-------(((....)))).....))).--))))).......-----------........ ( -26.90)
>DroSec_CAF1 277366 93 + 1
CUAGUGCCAGGAUAAGCACAUCCUGCCGGGAAAAAUCCGAAUUAAAUCGGG-------GGCCUGUGCCCAAACACCCACACGCUGCCAUAAA-----------AAAGAAAC
.(((((.((((((......))))))..(((......((((......))))(-------(((....)))).....)))...))))).......-----------........ ( -26.90)
>DroSim_CAF1 307823 93 + 1
CUAGUGCCAGGAUAAGCACAUCCUGCCGGGAAAAAUCCGAAUUAAAUCGGG-------GGCCUGUGCCCAAACACCCACACGCUGCCAUAAA-----------AAAGAAAC
.(((((.((((((......))))))..(((......((((......))))(-------(((....)))).....)))...))))).......-----------........ ( -26.90)
>DroEre_CAF1 291143 100 + 1
CUAGUGCCAGGAUA-GCACAUCCUGCCGGGAAAAAUCCGAGUCAUAGCGG--------GGCCUGUGCCCAAACACCCA--CGCUGCCAAACAAAGUAGAAGCAAAAGAAAC
((..(((((((((.-....)))))).((((.....)))).....((((((--------((..(((......)))))).--)))))...............)))..)).... ( -24.70)
>DroYak_CAF1 287202 101 + 1
CUAGUGCCAGGAUAAGCACAUCCUGCCGGGAAAAAUCCGAGUUAAAUCGG--------GGCCUGUGCCCAAGCACCCA--CGCUGCCAAACAAAUUAGAAGCAAAGGAAAA
...((((........)))).((((...(((.......(((......)))(--------(((....)))).....))).--.(((...............)))..))))... ( -25.86)
>DroAna_CAF1 277864 86 + 1
--AGU-CCAGGACUAGAAGGUCCU-CUGAAAGGAGUACGGAGUA---CGAGAGACACGCGCAGAUACGCAGAUACACA--CAGUU-----CA-----------GACACACU
--.((-(..(((((.....(((((-((....))))..((.....---))...)))..(((......))).........--.))))-----).-----------)))..... ( -19.10)
>consensus
CUAGUGCCAGGAUAAGCACAUCCUGCCGGGAAAAAUCCGAAUUAAAUCGGG_______GGCCUGUGCCCAAACACCCA__CGCUGCCAUACA___________AAAGAAAC
.(((((.((((((......))))))..(((......((((......))))........(((....)))......)))...))))).......................... (-15.41 = -16.38 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:50 2006