Locus 2294

Sequence ID 3R_DroMel_CAF1
Location 6,511,958 – 6,512,053
Length 95
Max. P 0.643842
window3708

overview

Window 8

Location 6,511,958 – 6,512,053
Length 95
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 83.77
Mean single sequence MFE -30.44
Consensus MFE -21.25
Energy contribution -23.22
Covariance contribution 1.97
Combinations/Pair 1.07
Mean z-score -1.76
Structure conservation index 0.70
SVM decision value 0.23
SVM RNA-class probability 0.643842
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6511958 95 + 27905053
CUGUGCGACAGCAGACAUCGCAAUAAUUAUUGCUGACAGGCAGCAACAACAACAUAAAGGCAACAACAGCAGUGGGUC-------------------ACAACAAAUGGCUAAGA
((((......)))).(((.((........((((((.....))))))............(....)....)).)))((((-------------------(.......))))).... ( -18.90)
>DroSec_CAF1 276558 114 + 1
CUGUGCGACAGCAACCAUCGCAAUAAUUAUUGCUGACGGGCAGCAAUAACAACAUUAAGGCAACAGCAGCAGUGGGUCACUGGAGAGCCAAGUGAUCACAACAAAUGGCUAAGA
...(((....))).((((.((.....(((((((((.....))))))))).........(....).))....((.(((((((((....)).)))))))...))..))))...... ( -31.00)
>DroSim_CAF1 307035 114 + 1
CUGUGCGACAGCAGCCAUCGCAAUAAUUAUUGCUGACGGGCAGCAAUAACAACAUUAAGGCAACAGCAGCAGUGGGUCACUGGAGAGCCAAGUGAUCACAACAAAUGGCUAAGA
....((....))((((((.((.....(((((((((.....))))))))).........(....).))....((.(((((((((....)).)))))))...))..)))))).... ( -35.20)
>DroEre_CAF1 290282 114 + 1
CUACGCGACAGCAGCCAUCGCAAUAAUUGUUGCUGACGGGCAGCAGUAACAGCACAAAGGCAACGACUGCAGUGGGUCACUGGAGAGCCAGGAGAUCUCAACAAAUGGCCAAGA
.....((.(((((((.((.......)).))))))).))(((.(((((....((......))....))))).(((((((.((((....))))..)))))..)).....))).... ( -35.00)
>DroYak_CAF1 286489 114 + 1
CUGCGCGACAGCAGCAAUCGCUAAAAUUAUUGCUGACGGGCAGCAAUAACAACAUAGAGGCACCGACUACAGUGGGUCACUGGAGAGCCAGGUGAUCACAACAAAUGGCUAAAA
((((......)))).....((((...(((((((((.....))))))))).......((..((((((((......))))..(((....))))))).))........))))..... ( -32.10)
>consensus
CUGUGCGACAGCAGCCAUCGCAAUAAUUAUUGCUGACGGGCAGCAAUAACAACAUAAAGGCAACAACAGCAGUGGGUCACUGGAGAGCCAAGUGAUCACAACAAAUGGCUAAGA
....((....))(((((((((.....(((((((((.....))))))))).........(....).......)))(((((((((....))).)))))).......)))))).... (-21.25 = -23.22 +   1.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:49 2006