Locus 2293

Sequence ID 3R_DroMel_CAF1
Location 6,511,508 – 6,511,627
Length 119
Max. P 0.735678
window3707

overview

Window 7

Location 6,511,508 – 6,511,627
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.31
Mean single sequence MFE -24.83
Consensus MFE -16.75
Energy contribution -17.25
Covariance contribution 0.50
Combinations/Pair 1.10
Mean z-score -2.09
Structure conservation index 0.67
SVM decision value 0.44
SVM RNA-class probability 0.735678
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6511508 119 + 27905053
AUUUGACACUUACUGGCCCCAAAAACUAUUUAAACAACAGUUUCCUAAGGAAAUCCU-AUGGCAUUCGAUUGCUGUAAACGUGAAUAACAAUCAUCGCGGAAAUAGUUUUAAAAGGGAAU
................(((..((((((((((........((((((...))))))..(-((((((......)))))))..(((((..........))))).))))))))))....)))... ( -24.50)
>DroSim_CAF1 306586 119 + 1
AUUUGACACUUACAGGCCCCAAAAACUAUUUAAACAACAGUUUCCUAAGGAAAUCCU-AUGUAAUUCGAUUUCUGUAAACGUGAAUAACAACCAUCGCGGAAAUAGUUUUAAAAGGGAAU
................(((..((((((((((.................(((((((..-.........))))))).....(((((..........))))).))))))))))....)))... ( -20.30)
>DroEre_CAF1 289838 119 + 1
AUUCGGCACAUACUGCCCCCAAAAAAUAUUUAAGCAACAGCUUCCAAAGGAAAUCCA-AUACAACUCGAUUUCUGUACACGCGAAUGACAAGCAUCGCGGAAGUUGGUUUAUAAGGGAAU
....((((.....))))(((..........(((((..((((((((...(((((((..-.........)))))))......((((.((.....)))))))))))))))))))...)))... ( -30.42)
>DroYak_CAF1 286069 120 + 1
AUUUGACACAUACUGCCCCCAAAAACUAUUUAAACAACAGUUUCCAAAGAAAAUCCAAAUACAACGCGAUUUCUGUAAACGUGAGUAACAAUCAUCGCGGAAAUAGUUUUAAAAGGGAAU
...............(((...((((((((((.........((((....))))............((((((...(((..((....)).)))...)))))).))))))))))....)))... ( -24.10)
>consensus
AUUUGACACAUACUGCCCCCAAAAACUAUUUAAACAACAGUUUCCAAAGGAAAUCCA_AUACAACUCGAUUUCUGUAAACGUGAAUAACAAUCAUCGCGGAAAUAGUUUUAAAAGGGAAU
................(((..((((((((((((((....)))).....(((((((............))))))).....(((((..........))))).))))))))))....)))... (-16.75 = -17.25 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:48 2006