Locus 2285

Sequence ID 3R_DroMel_CAF1
Location 6,498,202 – 6,498,294
Length 92
Max. P 0.508520
window3695

overview

Window 5

Location 6,498,202 – 6,498,294
Length 92
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 83.37
Mean single sequence MFE -32.70
Consensus MFE -20.78
Energy contribution -22.38
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.64
SVM decision value -0.05
SVM RNA-class probability 0.508520
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6498202 92 - 27905053
GGUUGGGAUGCCCGGAUGACU-GGAUGC-UGGAUGCCUCGAUGCUCAUCAUCAUCCCUCCUCCGAUCCUGGCGCUUAAGUGUCAGGUGUCUCAC
((..((((((....(((((((-.((.((-.....)).)).).).)))))..))))))....))(((((((((((....)))))))).))).... ( -35.00)
>DroSec_CAF1 261759 92 - 1
-GUUGGGAUGCCCGGAUGACU-GGAUGCCUGGAUGCCUCGAUGCUCAUCAUCAUCCCUUCUCCGAUCCUGGCGCUUAAGUGUCAGGUGUCUCAC
-..(((((((((((((.((..-(((((....((((.(.....)..))))..)))))..))))))....((((((....))))))))))))))). ( -33.30)
>DroSim_CAF1 291059 84 - 1
-GUUGGGAUGCCCGGAUGACU-GGA--------UGCCUCGAUGCUCAUCAUCAUCCCUCCUCCGAUCCUGGCGCUUAAGUGUCAGGUGUCUCAC
-..(((((((((((((.((..-(((--------((....(((....)))..))))).)).))))....((((((....))))))))))))))). ( -30.90)
>DroEre_CAF1 274846 80 - 1
-GUUGG---------AUAGCU-GGACGCCUGGAUGGCUGGAUGCUCAU---CAUCCCUCCUCCGAUGCUGGCGCUCAAGUGUCAGGUGUCUCAC
-.....---------......-(((((((((((.((..(((((.....---)))))..)))))((((((........))))))))))))))... ( -29.20)
>DroYak_CAF1 270587 92 - 1
-GCUGGGAUGUUGG-GAUGCUGGGAUGACUGGAUGCCUGGAUGCUCAUCAUCAUCCCUCCUCCGAUCCUGGCGCUUAAGUGUCAGGUGUCUCAC
-..((((((....(-((.(..(((((((...((((.(.....)..)))).)))))))..))))...((((((((....)))))))).)))))). ( -35.10)
>consensus
_GUUGGGAUGCCCGGAUGACU_GGAUGCCUGGAUGCCUCGAUGCUCAUCAUCAUCCCUCCUCCGAUCCUGGCGCUUAAGUGUCAGGUGUCUCAC
...((((((.............(((.....(((((....(((....)))..)))))....)))...((((((((....)))))))).)))))). (-20.78 = -22.38 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:37 2006