| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,496,206 – 6,496,312 |
| Length | 106 |
| Max. P | 0.589376 |
| Location | 6,496,206 – 6,496,312 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.54 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -19.32 |
| Energy contribution | -19.57 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6496206 106 + 27905053 UUUGCGCACUGG---GAAGUAAGUUGGCAAGCGGCUAUAAUGCGCUUGGAUAUGCAAAAUUGCAUUGAAAUUUGAAUUCAAUUCAAAAAGGGGCCAUUGGCCGA---AGAGG (((((.((((..---......)).)))))))((((((....((.(((....(((((....))))).....(((((((...))))))).))).))...)))))).---..... ( -25.30) >DroVir_CAF1 297673 92 + 1 ---------------AGAGUAAGUUGGCAAGCGGCUAUAAUGCGCUUGGAUAUGCAAAAUUGCAUUGAAAUUUGAAUUCAAUUCA---AAAGCCUGUUGGCCAUUCC-G-AC ---------------.......(((((.((..(((((....((..(((((((((((....)))))((((.......)))))))))---)..))....))))).))))-)-)) ( -22.80) >DroPse_CAF1 267865 103 + 1 --UG-CCUCUGG---GAAGUAAGUUGGCAAGCGGCUAUAAUGCGCUUGGAUAUGCAAAAUUGCAUUGAAAUUUGAAUUCAAUUCA---AAAGGCCGUUGGCCCCCACAUCGG --..-....(((---(.........(((.(((((((.(((((((.(((......)))...)))))))...(((((((...)))))---)).))))))).)))))))...... ( -27.90) >DroGri_CAF1 336045 94 + 1 ---------------AGAGUAAGUUGGCAAGCGGCUAUAAUGCGCUUGGAUAUGCAAAAUUGCAUUGAAAUUUGAAUUCAAUUCA---AAAGGCCGUUGGCCAACAAUUCGC ---------------.((((..((((((.(((((((.(((((((.(((......)))...)))))))...(((((((...)))))---)).))))))).)))))).)))).. ( -32.20) >DroWil_CAF1 379603 109 + 1 AUUGGGUGCGGGUUUGAAGUAAGUUGGCAAGCGGUUAUAAUGCGCUUGGAUAUGCAAAAUUGCAUUGAAAUUUGAAUUCAAUUCA---AAAGGCCGUUGCCCGUUGCAUCUC ...((((((((((.....((......)).(((((((.(((((((.(((......)))...)))))))...(((((((...)))))---)).)))))))))))...)))))). ( -27.30) >DroPer_CAF1 272580 103 + 1 --UG-CCUCUGG---GAAGUAAGUUGGCAAGCGGCUAUAAUGCGCUUGGAUAUGCAAAAUUGCAUUGAAAUUUGAAUUCAAUUCA---AAAGGCCGUUGGCCCCCACAUCGG --..-....(((---(.........(((.(((((((.(((((((.(((......)))...)))))))...(((((((...)))))---)).))))))).)))))))...... ( -27.90) >consensus __UG__C_CUGG___GAAGUAAGUUGGCAAGCGGCUAUAAUGCGCUUGGAUAUGCAAAAUUGCAUUGAAAUUUGAAUUCAAUUCA___AAAGGCCGUUGGCCAACACAUCGC .........................(((.(((((((.(((((((.(((......)))...))))))).....(((((...)))))......))))))).))).......... (-19.32 = -19.57 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:34 2006