| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,493,161 – 6,493,260 |
| Length | 99 |
| Max. P | 0.753746 |
| Location | 6,493,161 – 6,493,260 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 86.20 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -19.27 |
| Energy contribution | -19.97 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.753746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6493161 99 - 27905053 CUACUAUAUGCUACUAUUUCCCCUCUCCAUCUUCGUCAUCCAGUUGCCCAAAUAAGGUGCAACAAUUGCAGCAGUGGCCGCUUUUGCCACCGUUGCAAG ..........................................(((((((......)).)))))..(((((((.(((((.......))))).))))))). ( -27.10) >DroSec_CAF1 256773 99 - 1 CUACUAUAUGCUACUAUUUCCCCUCUCCAACUUCGUCAUCCAGUUGCCCAAAUAAGGUGCAACAAUUGCAGCAGUGGCCGCUGUUGCCACCGUUGCAAG ..........................................(((((((......)).)))))..(((((((.(((((.......))))).))))))). ( -27.10) >DroSim_CAF1 286055 99 - 1 CUACUAUAUGCUACUAUUUCCCCUCUCCAUCUUCGUCAUCCAGUUGCCCAAAUAAGGUGCAACAAUUGCAGCAGUGGCCGCUGUUGCCACCGUUGCAAG ..........................................(((((((......)).)))))..(((((((.(((((.......))))).))))))). ( -27.10) >DroEre_CAF1 269886 99 - 1 CUACUAUAGGCUACUAUAUCCCCUCUCUAUCUCCGUCAUCCAGUUGCCCAAAUAAGGUGCAACAAUUGCAGCAGUGUCCGCUGUUGCCACCGUUGCAAG ....(((((....)))))........................(((((((......)).)))))..(((((((.(((...((....))))).))))))). ( -24.90) >DroYak_CAF1 265409 99 - 1 CUACUAUGUGCUACUAUAUCCCCGCUCUAUCUUCAUCAUCCAGUUGCCCAAAUAAGGUGCAACAAUUGCAGCAGUGUCCGCUGUUGCCACCGUUGCAAG ........(((.((............................(((((((......)).)))))....((((((((....))))))))....)).))).. ( -25.10) >DroAna_CAF1 249673 84 - 1 GUACUACAUACU---------CCCCCCCAUCCGCAUCACCCAGUUGCCCAAAUAAGGUGCAACAAUUGCAGCAGCCAC------UGCCACUGCAGCAAC ............---------...........((........(((((((......)).)))))...(((((..((...------.))..)))))))... ( -19.90) >consensus CUACUAUAUGCUACUAUUUCCCCUCUCCAUCUUCGUCAUCCAGUUGCCCAAAUAAGGUGCAACAAUUGCAGCAGUGGCCGCUGUUGCCACCGUUGCAAG ..........................................(((((((......)).)))))..(((((((.(((...((....))))).))))))). (-19.27 = -19.97 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:33 2006