| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,484,357 – 6,484,449 |
| Length | 92 |
| Max. P | 0.638148 |
| Location | 6,484,357 – 6,484,449 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.96 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -17.71 |
| Energy contribution | -18.35 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6484357 92 + 27905053 ---AAAGGCGCAUACGCAACGACCUGCAGGUCGCACAGUGGACAGACACAUGGACACAUGGACACC-----AUGGACACCGGAUAGUGGACAUGGUGGAG ---....(((....)))..(((((....)))))..(((((..((......))..))).))..((((-----(((..(((......)))..)))))))... ( -34.40) >DroSec_CAF1 248308 71 + 1 ---AAAGGCGCAUGCGCAACGACCUGCAGGUCGCACAGUGGAC------------A---------C-----AUGGACACCGGAUAGUGGACAUGGUGGAG ---....(((....)))..(((((....)))))(((.(((..(------------(---------(-----.(((...)))....)))..))).)))... ( -22.80) >DroSim_CAF1 273793 79 + 1 ---AAAGGCGCAUGCGCAACGACCUGCAGGUCGCACAGUGGAC----ACACGGACA---------C-----AUGGACACCGGAUAGUGGACAUGGUGGAG ---....(((....)))..(((((....)))))(((.(((...----.))).....---------(-----(((..(((......)))..)))))))... ( -27.10) >DroEre_CAF1 261314 87 + 1 ---AAAGGCGCAUGCGCAACGACCUGCAGGUCGCACAGUGGAC----ACAUGGACACAUGGACAC------AUGGACACCGGAUAGUGGACAUGGUGGAG ---....(((....)))..(((((....)))))(((.(((..(----....)..))).......(------(((..(((......)))..)))))))... ( -29.10) >DroYak_CAF1 256182 93 + 1 ---AAAGGCGCAUGCGCAACGACCUGCAGGUCGCACUGUGGAC----ACAUGGACACAUGGACACCGGAUAGUGGACAGCGGAUAGUGGACAUGGUGGAA ---....(((....)))..(((((....)))))(((((((..(----((.((..(.(.((..(((......)))..))).)..)))))..)))))))... ( -33.30) >DroAna_CAF1 242772 82 + 1 GGGGAAGGCGCAUGCGCAACGACCUGCAGGUCGCACAUCGGAC----AUAGA-------GGACA-------GCGGACACUGGACAGUGGACAGAGUGGGG .......(((....)))..(((((....)))))(((.(((..(----.....-------)..).-------..(..((((....))))..).)))))... ( -22.50) >consensus ___AAAGGCGCAUGCGCAACGACCUGCAGGUCGCACAGUGGAC____ACAUGGACA___GGACA_C_____AUGGACACCGGAUAGUGGACAUGGUGGAG .......(((....)))..(((((....)))))(((.(((........)))....................(((..(((......)))..))).)))... (-17.71 = -18.35 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:29 2006