| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 916,528 – 916,625 |
| Length | 97 |
| Max. P | 0.749303 |
| Location | 916,528 – 916,625 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 75.42 |
| Mean single sequence MFE | -29.88 |
| Consensus MFE | -14.26 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 916528 97 - 27905053 UU-GUUUAGCGGUAAAGCGGUCGAGCGGGCAACGCUGAACGGACUGAGGUGCAUG----CUUCAAAGGG--GGAUACAAGGACCGCUGGCUGAA---AAAAAAAUGA ..-.((((((.....(((((((.((((.....))))........((((((....)----))))).....--.........))))))).))))))---.......... ( -29.00) >DroSec_CAF1 5489 95 - 1 UU-GUUUGGCGGUAAAGCGGUCGAGCGGGCAACGCUGAACGGACUGAGGUGCAUG----CAUCAGAGGG--GG-AACAAGGACCGCUGACCGGA---AA-AAAAUGA ..-.(((..((((..(((((((.((((.....)))).......((((.((....)----).))))....--..-......))))))).))))..---))-)...... ( -29.20) >DroSim_CAF1 11379 94 - 1 UU-GUUUGGCGGUAAAGCGGUCGAGCGGGCAACGCUGAACGGACUGAGGUGCACG----CAUCAGAGG---GA-AACAAGGACCGCUGGCCGGA---AA-AAAAUGA ..-.((((((.....(((((((.((((.....)))).......((((.((....)----).))))..(---..-..)...))))))).))))))---..-....... ( -31.30) >DroEre_CAF1 5583 98 - 1 ---UUUUAGCGGCAAAGACGCCGAGUGGGCAGCUCUGCGCGGAUUGAGGCACAUGUGUACAUCCGAGGAGGGC-AGCAAGGACCGCUAGUCG----AAA-AAAAUGA ---..((((((((......(((.....))).(((((.(.(((((....(((....)))..))))).).)))))-......).)))))))...----...-....... ( -33.30) >DroYak_CAF1 18598 100 - 1 UUUUUUUAGCGGUAAAGUGGCCGAGUGGACAUCUCUAAACGGAUUGAGGUGCAUAAG-----CAGAGAAGGCC-AGCAAGGACCGUUGGCCAGAAAAAA-AAAAUGA (((((((.(((((......))).....(.((((((..........)))))))....)-----)......((((-(((.......))))))).)))))))-....... ( -26.60) >consensus UU_GUUUAGCGGUAAAGCGGUCGAGCGGGCAACGCUGAACGGACUGAGGUGCAUG____CAUCAGAGGA__GC_AACAAGGACCGCUGGCCGGA___AA_AAAAUGA .........((((..(((((((.((((.....))))....(.((....)).)............................))))))).))))............... (-14.26 = -14.70 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:12 2006