Locus 2279

Sequence ID 3R_DroMel_CAF1
Location 6,476,727 – 6,476,823
Length 96
Max. P 0.822993
window3686

overview

Window 6

Location 6,476,727 – 6,476,823
Length 96
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 81.84
Mean single sequence MFE -27.94
Consensus MFE -18.24
Energy contribution -19.28
Covariance contribution 1.04
Combinations/Pair 1.05
Mean z-score -2.05
Structure conservation index 0.65
SVM decision value 0.69
SVM RNA-class probability 0.822993
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6476727 96 - 27905053
ACAAU-UACUCCCACAUCUAAUUAGCGCUUCUUUCAGUGCAGU-UCGGGUUCUGGUUCUGUUUCAGUUU------------CAGAGCCAGUUGCUCUUUUCCAUGGGCUC
.....-....((((..........(((((......)))))...-..((((.(((((((((.........------------)))))))))..)))).......))))... ( -28.80)
>DroSec_CAF1 240690 97 - 1
ACAUC-UACUCCCACAUCUAAUUAGCGCUUCUUUCAGUGCAGGACCAGGUUCGGGUUCUGUUUCAGUUU------------CAGAGCCAGUUGCUCUUCUCCAUGGGCCC
.....-....((((..........(((((......))))).(((..((((...(((((((.........------------)))))))....)).))..))).))))... ( -26.60)
>DroSim_CAF1 266101 90 - 1
ACAUC-UACUCCCACAUCUAAUUAGCGCUUCUUUCAGUGCA-------GUUCGGGUUCUGUUUCAGUUU------------CAGAGCCAGUUGCUCUUCUCCAUGGGCCC
.....-....((((..........(((((......)))))(-------((...(((((((.........------------)))))))....)))........))))... ( -21.90)
>DroEre_CAF1 253926 108 - 1
GCAGC-UACUCCCACAUCCAAUUAGCGCUUCUCUCAGUGCAGC-UCGGCUUCUGGUUCUGGUUCUGCUUCAGUUUCAGUUUCAGUGCCCGUUGCUCUUUUCCAUGGGCCC
.....-....((((..........(((((......)))))(((-.(((...((((..((((..(((...)))..))))..))))...)))..)))........))))... ( -29.40)
>DroYak_CAF1 248171 109 - 1
ACAGCCUACUCCCACAUCCAAUUAGCGCUUCUUUCAGUGCAGC-UCGGGUUCUGGCUCUGUUUCAGUUUCAGUGGCAGUGGCAGUGCCAGUUGCUCUUUUCCAUGGGCCC
...(((((................(((((......)))))...-..((((.(((((.((((..(.(((.....))).)..)))).)))))..)))).......))))).. ( -33.00)
>consensus
ACAGC_UACUCCCACAUCUAAUUAGCGCUUCUUUCAGUGCAGC_UCGGGUUCUGGUUCUGUUUCAGUUU____________CAGAGCCAGUUGCUCUUUUCCAUGGGCCC
..........((((..........(((((......)))))......((((...(((((((.....................)))))))....)))).......))))... (-18.24 = -19.28 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:28 2006