Locus 2278

Sequence ID 3R_DroMel_CAF1
Location 6,476,412 – 6,476,517
Length 105
Max. P 0.958759
window3685

overview

Window 5

Location 6,476,412 – 6,476,517
Length 105
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 92.20
Mean single sequence MFE -35.98
Consensus MFE -32.16
Energy contribution -32.24
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.61
Structure conservation index 0.89
SVM decision value 1.49
SVM RNA-class probability 0.958759
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6476412 105 - 27905053
GAUGGCACAUGGAAGUAUUUUGUGUGUAUGU------------AGCAC-ACCAGCAGGGUUGGCAGGAGGGCACUCAAUGCGUUAAUACAUCCGUUAGAGUUCCAUUUUGUUGGCCCG
....(((((..((.....))..)))))....------------.((..-....)).((((..((((((.((.((((...(((..........)))..)))).)).))))))..)))). ( -35.20)
>DroSec_CAF1 240382 105 - 1
GAUGGCACAUGGAAGUAUUUUGUGUGUAUGU------------AGCAC-ACCAGCAGGGUUGGCAGAAGGGCACUCAAUGCGUUAAUACAUCCGUUAGAGUUCCAUUUUGUUGGCCCG
....(((((..((.....))..)))))....------------.((..-....)).((((..((((((.((.((((...(((..........)))..)))).)).))))))..)))). ( -35.60)
>DroSim_CAF1 265792 105 - 1
GAUGGCACAUGGAAGUAUUUUGUGUGUAUGU------------AGCAC-ACCAGCAGGGUUGGCAGGAGGGCACUCAAUGCGUUAAUACAUCCGUUAGACUUCCAUUUUGUUGGCCCG
...(((((((((((((....((..(((((..------------.(((.-.(((((...)))))...(((....)))..)))....)))))..))....)))))))...)))..))).. ( -30.70)
>DroEre_CAF1 253612 105 - 1
GAUGCCACAUGGAGGUAUUUUGUGUGUGUGU------------AGCGC-ACCAGCAGGGUUGGCAGGAGGGCACUCAAUGCGUUAAUACAUCCGUUAGAGUUCCAUUUUGUUGGCCCG
((((((.......))))))(((.(((((...------------..)))-)))))..((((..((((((.((.((((...(((..........)))..)))).)).))))))..)))). ( -37.40)
>DroYak_CAF1 247818 118 - 1
GAUGGCACAUGGAAGUGUUUUGUGUGUAUGUUCUAUAGCCAGCAGGGCAACCAGCAGGGUUGGCAGGAGGGCACUCAAUGCGUUAAUACAUCCGUUAGAGUUCCAUUUUGUUGGCCCG
((..(((((..((.....))..)))))....))........((.((....)).)).((((..((((((.((.((((...(((..........)))..)))).)).))))))..)))). ( -41.00)
>consensus
GAUGGCACAUGGAAGUAUUUUGUGUGUAUGU____________AGCAC_ACCAGCAGGGUUGGCAGGAGGGCACUCAAUGCGUUAAUACAUCCGUUAGAGUUCCAUUUUGUUGGCCCG
....(((((..(((...)))..))))).............................((((..((((((.((.((((...(((..........)))..)))).)).))))))..)))). (-32.16 = -32.24 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:27 2006