| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,473,180 – 6,473,279 |
| Length | 99 |
| Max. P | 0.515608 |
| Location | 6,473,180 – 6,473,279 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.09 |
| Mean single sequence MFE | -24.19 |
| Consensus MFE | -19.39 |
| Energy contribution | -19.42 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6473180 99 - 27905053 UGCAUACGAAUCAACAAGAUCACUUUGGGACAUUGACAGACAAAUUAGUCAAGAUCCUGAGAGUGGUAUUCGCAUUAAUUAUGUAAAUCGCCCA------------------UCCAG--- ((((((............((((((((((((..(((((..........)))))..)))).))))))))............)))))).........------------------.....--- ( -22.05) >DroPse_CAF1 242953 118 - 1 UGCAUACAUAUCAA-AAGAUCACUUUGAGGCAUUGACAAACAAAUUUGUCAAGAUCCUGAAAGA-GUUUUCACAUUAAUUAUGUAAAUUGAUCGACUAUUGACUAAGGGCCAUCAAGAUU .((.......((((-..(((((((((.(((..((((((((....))))))))...))).)))).-......((((.....))))....))))).....))))......)).......... ( -23.52) >DroSec_CAF1 237174 99 - 1 UGCAUACGAAUCAAGAAGAUCACUCUGGGACAUUGACAGACAAAUUAGUCAAGAUCCUGAGAGUGGUAUUAGCAUUAAUUAUGUAAAUCGCCCA------------------UCCAG--- ((((((............((((((((((((..(((((..........)))))..)))).))))))))............)))))).........------------------.....--- ( -24.65) >DroSim_CAF1 262868 99 - 1 UGCAUACGAAUCAAGAAGAUCACUCUGGGACAUUGACAGACAAAUUAGUCAAGAUCCUGAGAGUGGUAUUCGCAUUAAUUAUGUAAAUCGCCCA------------------UCCAG--- ((((((..(((...(((.((((((((((((..(((((..........)))))..)))).)))))))).)))..)))...)))))).........------------------.....--- ( -27.50) >DroEre_CAF1 250664 99 - 1 UGCAUACGAGUCGAGAAGAUCGCUCUGGGACAUUGACAGACAAAUUAGUCGAGAUCCUGAGAGUGGUGUUCGCAUUAAUUAUGUAAAUCGCCCA------------------UCCAG--- ((((((..(((.(.(((.((((((((((((..(((((..........)))))..)))).)))))))).))).))))...)))))).........------------------.....--- ( -29.20) >DroYak_CAF1 244795 99 - 1 UGCAUACGAGUCAAGACGAUCGCUCUGCGACAUUUACAGACAAAUUAGUCAAGAUCCUGAGAGUGGUGUUCGCAUUAAUUAUGUAAAUCGCCCA------------------UCCAG--- .(((..(((.((.....)))))...)))..........(((......)))......(((.((..((((((..(((.....)))..)).))))..------------------)))))--- ( -18.20) >consensus UGCAUACGAAUCAAGAAGAUCACUCUGGGACAUUGACAGACAAAUUAGUCAAGAUCCUGAGAGUGGUAUUCGCAUUAAUUAUGUAAAUCGCCCA__________________UCCAG___ ((((((............((((((((((((..(((((..........)))))..)))).))))))))............))))))................................... (-19.39 = -19.42 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:26 2006