Locus 2275

Sequence ID 3R_DroMel_CAF1
Location 6,469,058 – 6,469,149
Length 91
Max. P 0.795560
window3682

overview

Window 2

Location 6,469,058 – 6,469,149
Length 91
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 90.55
Mean single sequence MFE -26.58
Consensus MFE -19.62
Energy contribution -19.38
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -2.12
Structure conservation index 0.74
SVM decision value 0.60
SVM RNA-class probability 0.795560
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6469058 91 + 27905053
GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUCGCC-------ACAGAGACUGUGUCCUCCUCUUGUCAUUAUAUCUGGA--------UAUCAUCUGGGUAU
..(((((((((.((((....)))).)))))))))...(((-------.((((....((((((...................)))--------)))..))))))).. ( -26.51)
>DroSec_CAF1 233153 88 + 1
GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUCGCC-------ACAGAGACUGUGUCCUGAUCUUGUCAUUAUAUCUGGA--------UA---UCUGGGUAU
..(((((((((.((((....)))).)))))))))...(((-------.((((.....(((((.(((..((....)).))).)))--------))---))))))).. ( -25.40)
>DroSim_CAF1 258786 88 + 1
GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUCGCC-------ACAGAGACUGUGUCCUCCUCUUGUCAUUAUAUCUGGA--------UA---UCUGGGUAU
..(((((((((.((((....)))).)))))))))...(((-------.((((.....(((((...................)))--------))---))))))).. ( -23.41)
>DroEre_CAF1 244320 88 + 1
GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUUGCC-------ACAGAGACUGUGUCCUCCUCAUGUCAUUAUAUCUGGA--------UA---UCUGGGUAU
..(((((((((.((((....)))).)))))))))..((((-------.(((((((...))).(((..((((....))))..)))--------..---)))))))). ( -24.80)
>DroYak_CAF1 240698 103 + 1
GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUUGCCAUGGAACACAGAGACUGUGUCCUCCUCUUGUCAUUAUAUCUGGAUAUCUGGAUA---UCUGGGUAU
..(((((((((.((((....)))).)))))))))..((.((.(((((((((...))))))..)))...)).))..(((((..(((((....)))---))..))))) ( -32.80)
>consensus
GUGGGGCAAACACGAAAAUAUUUGAGUUUGCCUUUUCGCC_______ACAGAGACUGUGUCCUCCUCUUGUCAUUAUAUCUGGA________UA___UCUGGGUAU
(((((((((((.((((....)))).))))))))...))).............(((..............)))...(((((..((.............))..))))) (-19.62 = -19.38 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:24 2006