Locus 2271

Sequence ID 3R_DroMel_CAF1
Location 6,439,463 – 6,439,556
Length 93
Max. P 0.602784
window3678

overview

Window 8

Location 6,439,463 – 6,439,556
Length 93
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 78.63
Mean single sequence MFE -16.96
Consensus MFE -12.39
Energy contribution -12.17
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.06
Structure conservation index 0.73
SVM decision value 0.14
SVM RNA-class probability 0.602784
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6439463 93 - 27905053
UUAU-------------AUAUUAACAAUAUAAUUUGUUCAUCUCUAGUA--ACGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAA
....-------------.....(((((......)))))...........--..(((((((((....(((.((((.....))))))))))))))))............. ( -13.90)
>DroGri_CAF1 258666 100 - 1
UGCU------UAAAAAAAAAUUGACAAGUU--UUUGGUUUUUUGUAGUAUAUUAUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAGAAGCAA
((((------(...(((((((..(......--.)..))))))).........((((((((((....(((.((((.....)))))))))))))))))(....)))))). ( -22.20)
>DroEre_CAF1 214867 93 - 1
UUAU-------------AUAUUAACAAUAUAAUUUGUUCAUCUCUAGUA--ACGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAA
....-------------.....(((((......)))))...........--..(((((((((....(((.((((.....))))))))))))))))............. ( -13.90)
>DroYak_CAF1 208476 93 - 1
UUAU-------------AUAUUAACAAUAUAAUUUGUUCAUCUCUAGUA--ACGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAA
....-------------.....(((((......)))))...........--..(((((((((....(((.((((.....))))))))))))))))............. ( -13.90)
>DroMoj_CAF1 273985 89 - 1
UGCUGGAUUG-------------ACAAGCU--UUUGGUUUUUCAUAGUAUAUUAUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGA----AGCAA
((((....((-------------(.((((.--....)))).)))........((((((((((....(((.((((.....)))))))))))))))))...----)))). ( -20.10)
>DroAna_CAF1 197025 86 - 1
------------------UUUCAACUGUUUCAUUUGUUCAUCUCUAGUA--ACGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAG-AAGCA-
------------------........(((((.(((((............--..(((((((((....(((.((((.....))))))))))))))))))))))-)))).- ( -17.73)
>consensus
UUAU_____________AUAUUAACAAUAUAAUUUGUUCAUCUCUAGUA__ACGUAGUAUGUAGAAGCAGCUGUGAUAAAUAGUGCGCAUAUUAUACGAAAAAAGCAA
.....................................................(((((((((....(((.((((.....))))))))))))))))............. (-12.39 = -12.17 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:20 2006