| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,425,245 – 6,425,342 |
| Length | 97 |
| Max. P | 0.553689 |
| Location | 6,425,245 – 6,425,342 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.43 |
| Mean single sequence MFE | -20.42 |
| Consensus MFE | -13.10 |
| Energy contribution | -12.22 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553689 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6425245 97 + 27905053 CUUUUGCUCAUUUCGCAGUUUGGGCAAAAAAUUA-----AAUAAAA--------GCGAAAUAUAAAUAAAAAUAACAGAGGGA-ACCUUUUGUUCUGACCAAGAAAUUCAA .(((((.(((((((((.((((((........)))-----)))....--------)))))))............((((((((..-..))))))))..)).)))))....... ( -18.20) >DroSec_CAF1 188954 97 + 1 CUUUUGCUCAUUUCGCAGUUUGGCCAAAAAAUUA-----AAUAAAA--------GCGAAAUAUAAAUAAAACUAACAGAGGGA-ACCUUUUGUUCUGACCAAGAAAUUCAA .(((((.(((((((((.((((((........)))-----)))....--------)))))))............((((((((..-..))))))))..)).)))))....... ( -17.40) >DroSim_CAF1 214177 97 + 1 CUUUUGCUCAUUUCGCAGUUUGGCCAAAAAAUUA-----AAUAAAA--------GCGAAAUAUAAAUAAAACUAACAGAGGGA-ACCUUUUGUUCUGACCAAGAAAUUCAA .(((((.(((((((((.((((((........)))-----)))....--------)))))))............((((((((..-..))))))))..)).)))))....... ( -17.40) >DroEre_CAF1 200370 97 + 1 CUUUUGCUCAUUUCGCAGUUUGGCCAAAAAAUUA-----AAUAAAA--------GCGAAAUAUAAAUAAAAAUAACAGAGGGA-ACCUUUUGUUCUGGCCAAGAAAUUCAA ...((((.......))))((((((((........-----.......--------......(((........)))(((((((..-..)))))))..))))))))........ ( -17.90) >DroYak_CAF1 193674 97 + 1 CUUUUGCUCAUUUCGCAGUUUGGCCAAGAAAUUA-----AAUAAAA--------GCGAGAUAUAAAUAAAAAUAACAGAGGGA-ACCUUUUGUUCUGGCCAAGAAAUUCAA ...((((.......))))(((((((((....)).-----.......--------...................((((((((..-..))))))))..)))))))........ ( -18.90) >DroAna_CAF1 184743 105 + 1 C---UGCUCACUUCGCAGGCCGGCAUACGCAUACAGGGGAGGAGGAGCUGGGGAGUGGAGU---AAAAAACAUAGCAGAGCGAAAGCCUUUGUUCCACUCAAGAAAUUCAA .---.((((.((((.(..(...((....))...)..).))))..))))....(((((((((---.....))...(((((((....).)))))))))))))........... ( -32.70) >consensus CUUUUGCUCAUUUCGCAGUUUGGCCAAAAAAUUA_____AAUAAAA________GCGAAAUAUAAAUAAAAAUAACAGAGGGA_ACCUUUUGUUCUGACCAAGAAAUUCAA .(((((.(((((((((..(((......))).(((.......)))..........)))))))............((((((((.....))))))))..)).)))))....... (-13.10 = -12.22 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:12 2006