Locus 2266

Sequence ID 3R_DroMel_CAF1
Location 6,422,852 – 6,422,943
Length 91
Max. P 0.534116
window3669

overview

Window 9

Location 6,422,852 – 6,422,943
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 84.48
Mean single sequence MFE -29.34
Consensus MFE -21.80
Energy contribution -21.88
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.83
Structure conservation index 0.74
SVM decision value 0.00
SVM RNA-class probability 0.534116
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6422852 91 - 27905053
GCGGCUGGCGCCGUGGCACGCAACAUGGAAAUGAAAAUAAUAAAAUGCGGCUACGUGCUGCAAUUUAGGCGCCUCGCUUUUCGUAUACCCC
((((..((((((...........(((....))).......((((.((((((.....)))))).)))))))))))))).............. ( -31.20)
>DroPse_CAF1 186460 79 - 1
GAGGCUGGCGCCGAGGCACGCAACAUUC------AAAUAAUAUAAUGUGGCUACGUGCUGCAAUUUAGGCGCCUC------CAUGCCACCC
..(((.((((((..((((((..(((((.------.........))))).....))))))........))))))..------...))).... ( -26.50)
>DroSec_CAF1 186592 91 - 1
GCGGCUGGCGCCGUGGCACGCAACAUGGAAAUGAAAAUAAUAAAAUGCGGCUACGUGCUGCAAUUUAGGCGCCUCGCUCUUCGUAUCCCCC
((((..((((((...........(((....))).......((((.((((((.....)))))).)))))))))))))).............. ( -31.20)
>DroSim_CAF1 210698 91 - 1
GCGGCUGGCGCCGUGGCACGCAACAUGGAAAUGAAAAUAAUAAAAUGCGGCUACGUGCUGCAAUUUAGGCGCCUCGCUCUUCGUAUCCCCC
((((..((((((...........(((....))).......((((.((((((.....)))))).)))))))))))))).............. ( -31.20)
>DroAna_CAF1 182717 91 - 1
GAGGCUGGCGCCGUGGCACGCAACAUCGAAAUGAAAAUAAUAUAAUGUGGCUACGUGCGGCAAUUUAGGCGCCUCGCUUCUUACAUCCCCC
(((((.(((((((((((.((((........((....)).......)))))))))(.....)......))))))..)))))........... ( -29.46)
>DroPer_CAF1 193771 79 - 1
GAGGCUGGCGCCGAGGCACGCAACAUUC------AAAUAAUAUAAUGUGGCUACGUGCUGCAAUUUAGGCGCCUC------CAUGCCACCC
..(((.((((((..((((((..(((((.------.........))))).....))))))........))))))..------...))).... ( -26.50)
>consensus
GAGGCUGGCGCCGUGGCACGCAACAUGGAAAUGAAAAUAAUAAAAUGCGGCUACGUGCUGCAAUUUAGGCGCCUCGCU_UUCAUAUCCCCC
......(((((((((((.((((.......................)))))))))(.....)......)))))).................. (-21.80 = -21.88 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:11 2006