Locus 2265

Sequence ID 3R_DroMel_CAF1
Location 6,420,366 – 6,420,458
Length 92
Max. P 0.587265
window3668

overview

Window 8

Location 6,420,366 – 6,420,458
Length 92
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 69.73
Mean single sequence MFE -25.26
Consensus MFE -11.84
Energy contribution -12.24
Covariance contribution 0.40
Combinations/Pair 1.11
Mean z-score -1.66
Structure conservation index 0.47
SVM decision value 0.11
SVM RNA-class probability 0.587265
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6420366 92 - 27905053
AUCA---------UUGUUGCAGGAGCUGCAGGAGACACACAGCUUUUGUUGAAAACAG---CUAGCUU-------UAUAGCUGAUGUCUUGCAGUAUUCC----AA-GUGCAUAGU
...(---------((((.(((((((((((((((.(....((((....))))....(((---(((....-------..)))))).).)))))))))..)))----..-.)))))))) ( -31.10)
>DroSec_CAF1 184154 93 - 1
AUCA---------UUGUUGCAGGAGCUGCAGGAGACACAAAGCUUUUGUUGAAAACAG---CUAGCUU-------UCUAGCCGAU----UGGAGAAUGCCUCACAGUAUCCCAAGU
.((.---------.(((((((((((((...(....)....)))))))))....))))(---((((...-------.))))).))(----(((.((.(((......))))))))).. ( -23.40)
>DroSim_CAF1 208229 92 - 1
AUCG---------UAGUUGCAGGAACUGCAGGAGACACAAAGCUUUUGUUGAAAACAG---CUAGCUU-------UCUAGCUGAU----UGGAGAAUGCCUCACAA-AUCACAAGU
...(---------(((((.....)))))).(....)........(((((.((...(((---((((...-------.))))))).(----(((((.....))).)))-.))))))). ( -23.40)
>DroEre_CAF1 195441 104 - 1
AUCAUAGUAGUCAUAGUUGCAGGAGCUGUGGGAGACACAAAGCUUUUGUUAAGAACAAAGCAUAGCUGAUUGGAGAAUGUCUAA-------CAGUAUCCA----AA-UGGCGCAGU
......((.(((((.((((((((((((.(((....).)).)))))))))....)))........((((.(((((.....)))))-------)))).....----.)-))))))... ( -26.40)
>DroYak_CAF1 188602 85 - 1
AUCA---------CAGUUGCAGGAGCUGUGGGAGACACAAAGCUUUUAUGGGGAACAG---CUAGCUU-------UAUAGCUAA-------CAGUAUCCG----AA-GUGCAUAGU
....---------....((((((((((.(((....).)).)))))))...(((.((.(---.(((((.-------...))))).-------).)).))).----..-..))).... ( -22.00)
>consensus
AUCA_________UAGUUGCAGGAGCUGCAGGAGACACAAAGCUUUUGUUGAAAACAG___CUAGCUU_______UAUAGCUGAU____UGCAGUAUCCC____AA_AUGCAAAGU
...............((((((((((((...(....)....)))))))))....)))......(((((...........)))))................................. (-11.84 = -12.24 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:10 2006