Locus 2264

Sequence ID 3R_DroMel_CAF1
Location 6,419,403 – 6,419,506
Length 103
Max. P 0.963519
window3667

overview

Window 7

Location 6,419,403 – 6,419,506
Length 103
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 91.64
Mean single sequence MFE -31.53
Consensus MFE -28.03
Energy contribution -27.27
Covariance contribution -0.77
Combinations/Pair 1.19
Mean z-score -2.95
Structure conservation index 0.89
SVM decision value 1.55
SVM RNA-class probability 0.963519
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6419403 103 - 27905053
GAAGUGUGGUCGGUUGGAUAGGAGUCGCAUGGUUGACUAGGACAGCUGGUCGCAGUGUGCUGUACAGAGGGGGAAAAAGCUCUGAAUAGAAAA-AACUAUGGAU
.....(((..((((((..(...(((((......))))).)..))))))..)))(((...((((.(((((..........))))).))))....-.)))...... ( -29.40)
>DroSec_CAF1 183189 103 - 1
GAAGUGUGGUCGGUUGGAUAGGAGUCGCAUGUUCGACCAGGACAGCUGGCCGUAGUCUGUUGUACAGAGGGGAAAAAACCUCUGAAUAGAAAA-AACUAUAAAU
.......(((((((((.....(.((((......)))))....)))))))))(((((.(.((((.((((((........)))))).))))...)-.))))).... ( -33.20)
>DroSim_CAF1 207275 104 - 1
GAAGUGUGGUCGGUUGGAUAGGAGUCGCAUGUUCGACCAGGACAGCUGGCCGUAGUCUGUUGUACAGAGGGGAAAAAACCUCUGAAUAGAAAAUAAGUAUGGAU
.......(((((((((.....(.((((......)))))....)))))))))....((((((...((((((........)))))))))))).............. ( -32.00)
>consensus
GAAGUGUGGUCGGUUGGAUAGGAGUCGCAUGUUCGACCAGGACAGCUGGCCGUAGUCUGUUGUACAGAGGGGAAAAAACCUCUGAAUAGAAAA_AACUAUGGAU
....((((((((((((.....(.((((......)))))....)))))))))))).....((((.((((((........)))))).))))............... (-28.03 = -27.27 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:09 2006