Locus 2262

Sequence ID 3R_DroMel_CAF1
Location 6,411,316 – 6,411,435
Length 119
Max. P 0.933867
window3665

overview

Window 5

Location 6,411,316 – 6,411,435
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 98.32
Mean single sequence MFE -31.65
Consensus MFE -30.43
Energy contribution -30.43
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.15
Structure conservation index 0.96
SVM decision value 1.23
SVM RNA-class probability 0.933867
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6411316 119 - 27905053
UCCUAUAUUGGCGAGCUACA-AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU
(((((....((((.((....-..)).((((.((((((...(((((.(((.((.........)).)))....)))))..))))))))))..)))).))))).................... ( -31.40)
>DroEre_CAF1 186426 119 - 1
UCCUAUAUUGGCGAGCUACA-AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU
(((((....((((.((....-..)).((((.((((((...(((((.(((.((.........)).)))....)))))..))))))))))..)))).))))).................... ( -31.40)
>DroYak_CAF1 179304 119 - 1
UCCUAUAUUGGCGAGCUACA-AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU
(((((....((((.((....-..)).((((.((((((...(((((.(((.((.........)).)))....)))))..))))))))))..)))).))))).................... ( -31.40)
>DroMoj_CAF1 239255 119 - 1
UCCUAUAUUGGCGAGCUACA-AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU
(((((....((((.((....-..)).((((.((((((...(((((.(((.((.........)).)))....)))))..))))))))))..)))).))))).................... ( -31.40)
>DroAna_CAF1 172326 119 - 1
UCCUAUAUUGGCGAGCUACA-AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU
(((((....((((.((....-..)).((((.((((((...(((((.(((.((.........)).)))....)))))..))))))))))..)))).))))).................... ( -31.40)
>DroPer_CAF1 181560 120 - 1
UCCUAUAUUGGCGAGCUACACAUGCAGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUAUCAACAGCGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU
(((((....((((.((.......)).((((.((((((...(((((.((..((((.........)))).)).)))))..))))))))))..)))).))))).................... ( -32.90)
>consensus
UCCUAUAUUGGCGAGCUACA_AUGCGGUGGUGCACCCAUGUUCGUAGUACGAUAACGACCUUCUUGCAAAAACGAAGCGGGUGCUCACAAUGCCCUGGGAUUAAAUGAAUCAAUAAUAAU
(((((....((((.((.......)).((((.((((((.((((((.....)))..)))..((((..........)))).))))))))))..)))).))))).................... (-30.43 = -30.43 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:07 2006