Locus 2261

Sequence ID 3R_DroMel_CAF1
Location 6,410,508 – 6,410,606
Length 98
Max. P 0.518308
window3664

overview

Window 4

Location 6,410,508 – 6,410,606
Length 98
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 81.22
Mean single sequence MFE -34.02
Consensus MFE -14.27
Energy contribution -15.67
Covariance contribution 1.39
Combinations/Pair 1.26
Mean z-score -2.78
Structure conservation index 0.42
SVM decision value -0.03
SVM RNA-class probability 0.518308
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6410508 98 - 27905053
CAUAAAUAUAAGUUCCGAAAAGCACUGAGGACAGCCGUGG--CUAGGGCC---------GAAGUGAGUACACUUUUGCC-UGC---CCCACG-C--GCCUUCCCAGUUCAUCUCAC
.....................(.((((.(((..(((((((--...((((.---------((((((....)))))).)))-)..---.)))))-.--))..))))))).)....... ( -33.90)
>DroSec_CAF1 174319 98 - 1
CAUAAAUAUAAGUUCCGAAAAGCACUGAGGACAGCCGUGG--CCAGGGCC---------GAAGUGAGUACACUUUUGCC-UGC---CCCACG-C--GCCUUCCCAGUUCAUCUCAC
.....................(.((((.(((..(((((((--...((((.---------((((((....)))))).)))-)..---.)))))-.--))..))))))).)....... ( -33.90)
>DroSim_CAF1 198408 98 - 1
CAUAAAUAUAAGUUCCGAAAAGCACUGAGGACAGCCGUGG--CGAGGGCC---------GAAGUGAGUACACUUUUGCC-UGC---CCCACG-C--GCCUUCCCAGUUCAUCUCAC
.....................(.((((.(((..(((((((--.(.((((.---------((((((....)))))).)))-).)---.)))))-.--))..))))))).)....... ( -33.90)
>DroEre_CAF1 185593 98 - 1
CAUAAAUAUAAGUUCCGAAAAGCACUGCGGACAGCCGUGG--CCAGGGCC---------GAAGUGACUACACUUUUGCC-UGC---CCCGCG-C--GCCUUCCCAGUUCAUCUCAC
.....................(.((((.(((..(((((((--...((((.---------((((((....)))))).)))-)..---.)))))-.--))..))))))).)....... ( -33.50)
>DroYak_CAF1 178484 98 - 1
CAUAAAUAUAGGUUCCGAAAAGCACUGAGGACAGCCGCGG--CCAGGGCC---------GAAGUGAGUACACUUUUGCC-UGC---GCCGCG-C--GCCUUCCCAGUUCAUCUCAC
.....................(.((((.(((..(((((((--(((((.(.---------((((((....)))))).)))-)).---))))))-.--))..))))))).)....... ( -38.20)
>DroPer_CAF1 180576 105 - 1
CAUAAAUUUAAGUUCCGAAA-----------CAGCUGCGAAUGCAAGGCCACACUAAAGAAAGUCAAUACGACUGUGCUGUGCGCCCGCAUGCCCAGCUGUGUCAGUCUAUCUCAC
................((.(-----------((((((.(.((((..(((((((.((.....((((.....)))).)).)))).))).)))).).))))))).))............ ( -30.70)
>consensus
CAUAAAUAUAAGUUCCGAAAAGCACUGAGGACAGCCGUGG__CCAGGGCC_________GAAGUGAGUACACUUUUGCC_UGC___CCCACG_C__GCCUUCCCAGUUCAUCUCAC
................((.....((((.(((..(((((((...((.(((..........((((((....)))))).))).)).....)))))....))..))))))).....)).. (-14.27 = -15.67 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:06 2006