Locus 226

Sequence ID 3R_DroMel_CAF1
Location 910,119 – 910,224
Length 105
Max. P 0.976486
window407

overview

Window 7

Location 910,119 – 910,224
Length 105
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 74.19
Mean single sequence MFE -53.22
Consensus MFE -26.75
Energy contribution -26.58
Covariance contribution -0.16
Combinations/Pair 1.22
Mean z-score -2.33
Structure conservation index 0.50
SVM decision value 1.77
SVM RNA-class probability 0.976486
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 910119 105 - 27905053
GCUCAACUUGGCAGCCGCCGCCGCUGCCGCCGG---------CCAGACCUCGUUUGUGCCGUUCAGUUCGGCGGCCACGGCGGUGGCGGCCACGCCCACAUUCCAGCACCUGCC
(((......(((.((((((((((((((((((((---------((((((...))))).)))(.......)))))))...))))))))))))...)))........)))....... ( -53.34)
>DroVir_CAF1 79250 105 - 1
CCUCGCAGCGGCAGCGGCCGGCGC---------CAAUUUGGGGCCAGCUUCGUUUGUGCCCUUUGGCACGGCGGCGACGUCGGCGACGGCAGCGCCAACAUUCCAGCAACUGCA
....((((..((....((((..((---------(((...((((((((......))).)))))))))).))))((((..((((....))))..)))).........))..)))). ( -51.10)
>DroPse_CAF1 83316 105 - 1
CCUCAACCUGGCCGCAGCCGCCGUGGCCGCCGGGAGCCUGGGGCAGACCUCGUUUGUGCCAUUCGGUGCGGC---C------GCGGCGGCGACGCCCACAUUCCAGCAUCUGCA
........(((.((..(((((((((((((((.(((...(((.((((((...)))))).)))))).).)))))---)------))))))))..)).))).......((....)). ( -56.20)
>DroSim_CAF1 4308 105 - 1
GCUCAACUUGGCAGCCGCCGCCGCUGCUGCCGG---------CCAGACCUCGUUUGUGCCGUUCAGUUCGGCGGCCACGGCGGUGGCGGCCACGCCCACAUUCCAGCACCUGCC
(((......(((.((((((((((((((((((((---------((((((...))))).)))(.......)))))))...))))))))))))...)))........)))....... ( -51.14)
>DroYak_CAF1 12161 105 - 1
GCUCAACUUGGCAGCCGCCGCCGCUGCCGCCGG---------ACAGACCUCGUUUGUGCCGUUCAACUCGGCGGCCACGGCGGUGGCGGCCACGCCCACAUUCCAGCACCUGCC
(((......(((.(((((((((((((..(((..---------((((((...))))))((((.......)))))))..)))))))))))))...)))........)))....... ( -51.44)
>DroPer_CAF1 83274 105 - 1
CCUCAACCUGGCCGCUGCCGCCGUGGCCGCCGGGAGCCUGGGGCAGACCUCGUUUGUGCCAUUCGGUGCGGC---C------GCGGCGGCGACGCCCACAUUCCAGCAUCUGCA
........(((.((.((((((((((((((((.(((...(((.((((((...)))))).)))))).).)))))---)------))))))))).)).))).......((....)). ( -56.10)
>consensus
CCUCAACUUGGCAGCCGCCGCCGCUGCCGCCGG_________GCAGACCUCGUUUGUGCCGUUCAGUUCGGCGGCCACGGCGGCGGCGGCCACGCCCACAUUCCAGCACCUGCA
.........(((.(..((((((((..................((((((...))))))(((.........)))..........))))))))..)))).........((....)). (-26.75 = -26.58 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:10 2006