| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,406,539 – 6,406,645 |
| Length | 106 |
| Max. P | 0.525330 |
| Location | 6,406,539 – 6,406,645 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.25 |
| Mean single sequence MFE | -32.35 |
| Consensus MFE | -16.92 |
| Energy contribution | -17.28 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.52 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6406539 106 - 27905053 UCCUCAGAUAGUUUCACCCUGUUGAGGAACUGGAAACUGGACAC-------AAUCCUGGCUCCUGUUCCAUUAGCAGCGGGUGUAAAUUGAGAGGAGCUCGGCUCGUAUUACU (((((...((((((((((((((((((((((.(((..(.(((...-------..))).)..))).))))).))))))..))))).)))))).)))))................. ( -37.80) >DroSec_CAF1 170319 106 - 1 UCCUCAGAUAGUUUCACCCUGCUCAGGAACUGGAAACUGGACAC-------AAUUCUGGCUCCUGUUCCAUUAGCAGCGGGUGUAAAUUGAGAGGAGCUCAUCUCGUAUUACU (((((...(((((((((((((((..(((((.(((..(..((...-------...))..).))).)))))...))))..))))).)))))).)))))................. ( -35.10) >DroSim_CAF1 194133 106 - 1 UCCUCAGAUAGUUUCACCCUGUUCAGGAACUGGAAACUGGACAC-------AAUUCUGGCUCCUGUUCCAUUAGCAGCGGGUGUAAAUUGAGAGGAGCUCGUCUCGUAUUACU (((((...(((((((((((((((..(((((.(((..(..((...-------...))..).))).)))))...))))..))))).)))))).)))))................. ( -32.70) >DroEre_CAF1 181551 113 - 1 UCUUCAGAUAUUUUCACCCUGCUCAGGAACUGGAAACUGGACAUACUCCAUACUUCUGGCUCCUGUUCCAUUAACAGCGGGUGUAAGUUGAGAGGAGCUCGGCUCGUAUUACU ......(((((...(((((.((((((((.(..(((..((((.....))))...)))..).)))))..........))))))))..(((((((.....))))))).)))))... ( -32.80) >DroYak_CAF1 174458 106 - 1 UCUUCAGAUAUUUUCACCCCGCUCAGGAAUGGGAAACAGGACAU-------AAUUCUGGCUCCUGUUCCAUUAACAGCGGGUGUAAAUUGAGAGGAGCUCGGCUCGUAUUACU ((((.....((((.(((((.(((..(((((((((..(((((...-------..)))))..)))))))))......)))))))).)))).)))).((((...))))........ ( -34.10) >DroPer_CAF1 176364 82 - 1 --------------------G---UUGGACCAGUAACUGGACAC-------AGUUCUGGCUUCUGUUCUGCUAUCAGCUGGUGUAAAUUGAGAGAGACUCGGCUCAUAUUAC- --------------------.---..(((((((.(((((....)-------)))))))).)))........(((.((((((.((...((....)).)))))))).)))....- ( -21.60) >consensus UCCUCAGAUAGUUUCACCCUGCUCAGGAACUGGAAACUGGACAC_______AAUUCUGGCUCCUGUUCCAUUAGCAGCGGGUGUAAAUUGAGAGGAGCUCGGCUCGUAUUACU .................((((((..(((((.(((..(.(((............))).)..))).)))))......)))))).((((..((((..........))))..)))). (-16.92 = -17.28 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:01 2006