| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,396,692 – 6,396,802 |
| Length | 110 |
| Max. P | 0.669850 |
| Location | 6,396,692 – 6,396,802 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.43 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -14.91 |
| Energy contribution | -14.47 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6396692 110 - 27905053 CAUUUUAAUUAUGGCAAUUACAAAUUGCAAUGGCAA-GCGCAGAAAUUGCAAAAAUCACGCAUUUUAUUGAUUUUUAAUUGCAACUCGUUGCAUACCAAAAGAUACCAG---------CA ...........(((...........((((((((...-((((((...))))((((((((..........))))))))....))...))))))))............))).---------.. ( -18.00) >DroVir_CAF1 173359 101 - 1 CAUUUUAAUUAUUGCAAUUACAAAUUGCAUU--------GCAAAAAUUGCAAAAAUCACGCAUUUUAUUGAUUUUUAAUUGCAGCUCGUUGCAUACCAAAGCUU-----------CAGCU ............((((((.....)))))).(--------((((...((((((((((((..........))))))....))))))....)))))......(((..-----------..))) ( -17.40) >DroGri_CAF1 204977 98 - 1 CAUUUUAAUUAUUGCAAUUACAAAUUGCAUU--------GCAAAAAUUGCAAAAAUCACGCAUUUUAUUGAUUUUUAAUUGCAGCUCGUUGCAUACCAAAAGCU--------GA------ .....((((((.((((((.....))))))((--------(((.....)))))((((((..........)))))).))))))(((((..(((.....))).))))--------).------ ( -16.10) >DroWil_CAF1 258092 108 - 1 -CUUUUAAUUAUUGCAAUUACAAAUUGC--UGCCGA-GCGCAAAAAUUGCAAAAAUCACGCAUUUUAUUGAUUUUUAAUUGCAGCUCGUUGCAUACCAAG--GCGCCUU--UUA----CA -............(((((.....)))))--.(((((-(((((.....)))((((((((..........)))))))).......)))).(((.....))))--)).....--...----.. ( -20.50) >DroMoj_CAF1 222527 111 - 1 CAUUUUAAUUAUUGCAAUUACAAAUUGCAUU--------GCAAAAAUUGCAAAAAUCACGCAUUUUAUUGAUUUUUAAUUGCAGCUCGUUGCAUACCAAAGCUCGCCAGCU-CGCCAGCU ............((((((.....)))))).(--------((((...((((((((((((..........))))))....))))))....)))))......((((.((.....-.)).)))) ( -21.20) >DroAna_CAF1 159082 109 - 1 CAUUUUAAUUAUGGCAAUUACAAAUUGCAAUGGCAGCGCGCAGAAAUUGCAAAAAUCACGCAUUUUAUUGAUUUUUAAUUGCAACUCGUUGCAUACCACAGAAAGC--G---------CU ........((((.(((((.....))))).)))).(((((((((...))))((((((((..........))))))))...(((((....)))))...........))--)---------)) ( -22.00) >consensus CAUUUUAAUUAUUGCAAUUACAAAUUGCAUU________GCAAAAAUUGCAAAAAUCACGCAUUUUAUUGAUUUUUAAUUGCAGCUCGUUGCAUACCAAAGCAUGC__G_________CU .............(((((.....)))))...........((((...((((((((((((..........))))))....))))))....))))............................ (-14.91 = -14.47 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:57 2006