| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,396,247 – 6,396,346 |
| Length | 99 |
| Max. P | 0.929851 |
| Location | 6,396,247 – 6,396,346 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 87.87 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -25.18 |
| Energy contribution | -25.35 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6396247 99 + 27905053 -UG---UGGAGAUUGCGUGGCAUUUUUCGCAUAUUUCUGCUGCACAUUUCGUGCAAAACUUAAUUAUAUUAACUGAGUUAUUUGCGGCAUUUGGCGCGCU--CUG------------ -..---...(((..(((((.((..(.(((((.........(((((.....))))).((((((.(((...))).))))))...))))).)..)).))))))--)).------------ ( -26.90) >DroVir_CAF1 172909 101 + 1 -GUUGACGCUGAUUGCGUGGCAUUUUUCGCAUAUUUCUGCUGCACAUUUCGUGCAAAACUUAAUUAUAUUAACUGAGUUAUUUGCGGCAUUUGGCGCGCU--GU------------- -.............(((((.((..(.(((((.........(((((.....))))).((((((.(((...))).))))))...))))).)..)).))))).--..------------- ( -26.30) >DroGri_CAF1 204480 101 + 1 -CUUGACGCUGAUUGCGUGGCAUUUUUCACAUAUUUCUGCUGCACAUUUCGUGCAAAACUUAAUUAUAUUAACUGAGUUAUUUGCGGCAUUUGGCGCGCU--CU------------- -...(.(((..(.(((((((......)))).......((((((((.....))))).((((((.(((...))).))))))....)))))).)..))))...--..------------- ( -24.80) >DroWil_CAF1 257623 104 + 1 -UUUGGUUAAGAUUGCGUGGCAUUUUUCGCAUAUUUCUGUUGCACAUUUCGUGCAAAACUUAAUUAUAUUAACUGAGUUAUUUGCGGCAUUUGGCGCGCUGGCUU------------ -.......(((...(((((.((..(.(((((........((((((.....))))))((((((.(((...))).))))))...))))).)..)).)))))...)))------------ ( -28.60) >DroMoj_CAF1 222048 101 + 1 -CUUGGCGCUGAUUGCGUGGCAUUUUUCGCAUAUUUCUGCUGCACAUUUCGUGCAAAACUUAAUUAUAUUAACUGAGUUAUUUGCGGCAUUUGGCGCGCU--GC------------- -....((((..(.(((((((......)))).......((((((((.....))))).((((((.(((...))).))))))....)))))).)..))))...--..------------- ( -28.20) >DroAna_CAF1 158689 112 + 1 GUG---CGGAGAUUGCGUGGCAUUUUUCGCAUAUUUCUGCUGCACAUUUCGUGCAAAACUUAAUUAUAUUAACUGAGUUAUUUGCGGCAUUUGGCGCGCU--CGAAAGAACCCUCAA (((---((((((.((((..........))))....))).)))))).(((((.((..((((((.(((...))).))))))....(((.(....).))))).--))))).......... ( -32.00) >consensus _UUUG_CGCAGAUUGCGUGGCAUUUUUCGCAUAUUUCUGCUGCACAUUUCGUGCAAAACUUAAUUAUAUUAACUGAGUUAUUUGCGGCAUUUGGCGCGCU__CU_____________ ..............(((((.((..(.(((((.........(((((.....))))).((((((.(((...))).))))))...))))).)..)).))))).................. (-25.18 = -25.35 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:56 2006