Locus 2251

Sequence ID 3R_DroMel_CAF1
Location 6,390,116 – 6,390,227
Length 111
Max. P 0.973031
window3650

overview

Window 0

Location 6,390,116 – 6,390,227
Length 111
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 74.63
Mean single sequence MFE -28.83
Consensus MFE -13.52
Energy contribution -16.27
Covariance contribution 2.75
Combinations/Pair 1.20
Mean z-score -2.78
Structure conservation index 0.47
SVM decision value 1.70
SVM RNA-class probability 0.973031
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6390116 111 - 27905053
-CACUAAGCUAUUUCUCAAAACAGCAAUUAAGUUUUUGGUAGACUACAUGGUCACACUGGGC-UUUUUCGCACUUAACAGUGUGCCCAUGAUAGAAUAUCAAGCAAAAGAAAA
-......(((.(((....))).))).........(((((((..((((((((.(((((((.((-......))......))))))).))))).)))..))))))).......... ( -28.90)
>DroSim_CAF1 177457 101 - 1
-CUUGGAGCUAUUUCUCAAAACAGCAAAUAUGUUUUUGGUAGA-----------CACUGGGUCUUUUUCGCACUUAAAAGUGUGCCCAUGUUAGAAUAUUAGGCAAAACAAAA
-......(((....((.((((((.......)))))).))..((-----------((.(((((.......(((((....)))))))))))))).........)))......... ( -19.21)
>DroEre_CAF1 165088 112 - 1
AUUCUGAAGUAUUUCCCACAAAAGCAAUCAUGCUUUUGAUACACUGCAUGGUCACACUGGGC-CCUUUCGGUGUUAGCAGUGUGGCCAUGAUAGAAUAUUAAGCAAAACGAAA
((((((............((((((((....))))))))........((((((((((((((((-((....)).)))..))))))))))))).))))))................ ( -37.40)
>DroYak_CAF1 157308 112 - 1
ACUCUGAAGUAUUUCUCCCAAGAGCAACCAUGAUUUUGAUAGACUGCAUGGUCACACUGGGC-UCCUUCGCUGCUAACAGUGUGACCAUAAUACAAUAAAAAGCAAAAGCAAA
........((((((((..(((((.((....)).)))))..)))....(((((((((((((((-.........)))..)))))))))))))))))........((....))... ( -29.80)
>consensus
_CUCUGAACUAUUUCUCAAAACAGCAAUCAUGUUUUUGAUAGACUGCAUGGUCACACUGGGC_UCUUUCGCACUUAACAGUGUGCCCAUGAUAGAAUAUUAAGCAAAACAAAA
..................................(((((((.....(((((((((((((..................)))))))))))))......))))))).......... (-13.52 = -16.27 +   2.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:53 2006