| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 907,683 – 907,784 |
| Length | 101 |
| Max. P | 0.661383 |
| Location | 907,683 – 907,784 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 90.10 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -23.79 |
| Energy contribution | -23.80 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 907683 101 + 27905053 ACCGACGCUUUCAGCUGGAGCUGGAUCCGAUCUCCAGUAUAUUUUAAUUACACUUGUGUGAAUGCCGCCGGCGGCAAUUGAAAUAUUUUUCCGUCUCUAAU ...((((......(((((((.((....))..)))))))(((((((((((.(((....)))...((((....))))))))))))))).....))))...... ( -31.40) >DroSim_CAF1 1895 101 + 1 ACCGACGCUGUCAGCUGGAGCUGGAUGGGAUCUCUAGUAUAUUUUAAUUACACUUGUGUGAAUGCCGCCGGCAGCAAUUGAAAUAUUUUUCCGUCUCUAAU ...(((((((((.((.((.((((((.......)))))).........(((((....)))))...)))).))))))....((((....)))).)))...... ( -27.30) >DroYak_CAF1 9839 96 + 1 ACCGACGCUGUCAGCUGGAG----AAGCGGUCUCUAAUAUAUUUUAAUUACACUUGUGUGAAUGCCGCCGGUGGCAAUUAAAAUAUU-UUCCGUCUCUAAU .(((..((.....)))))((----(..(((........(((((((((((.(((....)))...((((....))))))))))))))).-..)))..)))... ( -24.40) >consensus ACCGACGCUGUCAGCUGGAGCUGGAUGCGAUCUCUAGUAUAUUUUAAUUACACUUGUGUGAAUGCCGCCGGCGGCAAUUGAAAUAUUUUUCCGUCUCUAAU ...((((......(((((((...........)))))))(((((((((((.(((....)))...((((....))))))))))))))).....))))...... (-23.79 = -23.80 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:08 2006