Locus 2249

Sequence ID 3R_DroMel_CAF1
Location 6,386,144 – 6,386,237
Length 93
Max. P 0.817004
window3647

overview

Window 7

Location 6,386,144 – 6,386,237
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -19.13
Consensus MFE -12.19
Energy contribution -12.56
Covariance contribution 0.36
Combinations/Pair 1.06
Mean z-score -2.14
Structure conservation index 0.64
SVM decision value 0.67
SVM RNA-class probability 0.817004
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6386144 93 + 27905053
CUAUGC--CGAAAUUUAAUUUGUCUACAAAGUCAAGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCACACAAAAAAAAAUAU--
....((--((....((.(((((((((((..(((....))).))))))))))).))......))))..............................-- ( -18.20)
>DroVir_CAF1 161565 95 + 1
CUGUGUUUAAAAAUUUAAUUUGUCUACAAAGUAACUCGACGUGUAGAUAAAUCAAUCAAGAUGGCGCGUCGUGCCAACCGAAAAAAAA-CUACAAC-
.(((((((.........(((((((((((..((......)).))))))))))).........((((((...)))))).........)))-).)))..- ( -20.70)
>DroGri_CAF1 191720 93 + 1
CUAUGC--CAAAUUUUAAUUUGUCUACAAAGUAACUCGACGUGUCGAUAAAUCAAUCAAAAUGGCGCGUCGUGCCAGCGCAAAA-AGC-CAACAACA
...(((--..........((((....))))((..(.((((((((((((......))).....))))))))).)...)))))...-...-........ ( -17.00)
>DroSec_CAF1 150143 92 + 1
CUAUGC--CGAAAUUUAAUUUGUCUACAAAGUCAAGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCACACAAAAC-GUAUAA--
.(((((--.........(((((((((((..(((....))).))))))))))).........(((((.(....).)).)))........-))))).-- ( -19.70)
>DroEre_CAF1 161260 88 + 1
CUAUGC--CGAAAUUUAAUUUGUCUACAAAGUCAAGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGGCCGUACAAAAA-G-A-----
......--.........(((((((((((..(((....))).)))))))))))........(((((.((......))))))).......-.-.----- ( -20.90)
>DroYak_CAF1 153276 89 + 1
CUAUGC--CGAAAUUUAAUUUGUCUACAAAGUCAAGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCAUACAGAGA-GUA-----
...(((--(........(((((((((((..(((....))).)))))))))))........((((((.(....).)).)))).....).-)))----- ( -18.30)
>consensus
CUAUGC__CGAAAUUUAAUUUGUCUACAAAGUCAAGCGACGUGUAGAUAAAUCAAUCAAAAUGGCGCGCACACACGACCAAACAAAAA_GUA_AA__
....((........((.(((((((((((..(((....))).))))))))))).))........))................................ (-12.19 = -12.56 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:50 2006