| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,379,653 – 6,379,762 |
| Length | 109 |
| Max. P | 0.670188 |
| Location | 6,379,653 – 6,379,762 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 75.20 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -11.90 |
| Energy contribution | -12.23 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6379653 109 + 27905053 A-AAAGACAACAAACGCACACACGUUGGGUGAAAAGUAAUUGCGUUUAAAUGCGUUUACAUUAGGGCCCGAAACAAAGAUACAAACAUAUGUAUGUACCAUAUGUGGAUA .-................((((..((((((.....((((.(((((....))))).))))......))))))......(.((((.((....)).)))).)...)))).... ( -20.50) >DroSec_CAF1 143848 105 + 1 A-AAAGACAACCAACGCACACACGUUGGGUGAAAAGUAAAUGCGUUUAAAUGCGUUUACAUUAGGGCCCGAAACAAAGAUACAAAUAUG----UGUGCUAUAUGUGGAUA .-........(((..(((((((..((((((.....((((((((((....))))))))))......))))))................))----)))))......)))... ( -27.77) >DroSim_CAF1 167230 105 + 1 A-AAAGACAACCAACGCACACACGUUGGGUGAAAAGUAAUUGCGUUUAAAUGCGUUUACAUUAGGGCCCGAAACAAAGAUACAAAUAUA----UGUGCUAUAUGUGGAUA .-.....((.((((((......)))))).))....((((.(((((....))))).))))........(((......((.((((......----)))))).....)))... ( -19.80) >DroEre_CAF1 154999 91 + 1 ----------------CACACACGUUGGGUGCAAAGUAAUUGCGUUUAAAUGCGUUUACAUUAGGGCCCGAAACAAAGAUACAAAUGCGAGUAUGU---GUGUGUGGAUA ----------------(((((((.((((((.(((.((((.(((((....))))).)))).)).).)))))).....(.((((........)))).)---))))))).... ( -29.10) >DroYak_CAF1 146640 88 + 1 A-AGACACAACCAACUCACACACGUUGGGUGAAAAGUAAUUGCGUUUAAAUGCGUUUACAUUAGGGCCCGAAACAAAGAUACAAAU---------------------AUA .-...(((..(((((........))))))))....((((.(((((....))))).))))...........................---------------------... ( -14.30) >DroAna_CAF1 143854 91 + 1 CCAAACGCAAACAG-AAACAGACAUUUGGUGAAAAGUAAUUGCGUUUAAAUGCGUUUACAUUAGG-CCCGACAAGAACAGGG-AAUAG----------------GGGAGG (((((((((.....-((((.(.((.(((.(....).))).)))))))...)))))))...(((..-(((..........)))-..)))----------------)).... ( -18.50) >consensus A_AAAGACAACCAACGCACACACGUUGGGUGAAAAGUAAUUGCGUUUAAAUGCGUUUACAUUAGGGCCCGAAACAAAGAUACAAAUAU_____UGU___AUAUGUGGAUA ........................((((((.....((((.(((((....))))).))))......))))))....................................... (-11.90 = -12.23 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:46 2006