| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,376,879 – 6,376,994 |
| Length | 115 |
| Max. P | 0.794184 |
| Location | 6,376,879 – 6,376,994 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 68.16 |
| Mean single sequence MFE | -33.34 |
| Consensus MFE | -8.41 |
| Energy contribution | -8.67 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794184 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6376879 115 + 27905053 GCCAAGAAAAAAGGGCAAUGGCAAGGGCAAGGGCAAGGGCAGGGGAAAGGGGCAGCGGUAGGAUGAGGGUCCAAAACUGGUUCGAGCCCGCUGCUCUUAAGAGCUCUUAAUGCCG ((((..............))))...((((((((((((((((((((...(((.(((.....((((....))))....))).)))...))).))))))))....)))))...)))). ( -41.84) >DroPse_CAF1 139704 89 + 1 GAGAGAGGAAAGGGGUAAUGG---CAGUGAG-------GCAGGGG--------ACUGGUUCGGAGAGGUUCUGAAACUGGUUCGAG--------UCUUAAGAGCUCUUAAUGCCG ...................((---((.((((-------.(((...--------.))).))))(((((.(..(((.(((......))--------).)))..).)))))..)))). ( -26.30) >DroSec_CAF1 141140 104 + 1 GCCAAGAGAAAAGGGAAAGGGGAAGGGCAAGGGAAAGG-----------GGGCAGCGGUAGGAUGAGGGUCCAAAACUGGUUCGAGCCCGCUGCUCUUAAGAGCUCUUAAUGCCG .........................((((((((...((-----------(((((((((..((((.((.........)).))))....))))))))))).....))))...)))). ( -32.80) >DroSim_CAF1 164522 106 + 1 GCCAAGAGAAAAGGGAAAGGGCAAGGGCAGGGGAAAGG---------AGGGGCAGCGGUAGGAUGAGGGUCCAAAACUGGUUCGAACCCGCUGCUCUUAAGAGCUCUUAAUGCCG (((................)))...((((((((.....---------(((((((((((..((((.((.........)).))))....))))))))))).....))))...)))). ( -37.59) >DroYak_CAF1 143660 99 + 1 GCCAAGAGAAAAGGGCAAGGG---GCAUGGG-------GCAGGGGCAUGGAGCAGGGGCAGGGGCAGGGUCCAAAACUGGUUC------GCUGCUCUUAAGAGCUCUUAAUGCCG (((..........)))....(---(((((((-------(((((((((((((.(((......((((...))))....))).)))------).)))))))....)))))..))))). ( -35.20) >DroPer_CAF1 146872 89 + 1 GAGCGAGGAAAGGGGUAAUGG---CAGUGAG-------GCAGGGG--------ACUGGUUCGGAGAGGUUCUGAAACUGGUUCGAG--------UCUUAAGAGCUCUUAAUGCCG ...................((---((.((((-------.(((...--------.))).))))(((((.(..(((.(((......))--------).)))..).)))))..)))). ( -26.30) >consensus GCCAAGAGAAAAGGGAAAGGG___GGGCAAG_______GCAGGGG____GGGCAGCGGUAGGAUGAGGGUCCAAAACUGGUUCGAG___GCUGCUCUUAAGAGCUCUUAAUGCCG ........................................................((((....((((..(((....)))..)..........(((....))))))....)))). ( -8.41 = -8.67 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:45 2006