Locus 2245

Sequence ID 3R_DroMel_CAF1
Location 6,370,935 – 6,371,030
Length 95
Max. P 0.500000
window3640

overview

Window 0

Location 6,370,935 – 6,371,030
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.91
Mean single sequence MFE -22.56
Consensus MFE -14.85
Energy contribution -15.38
Covariance contribution 0.53
Combinations/Pair 1.04
Mean z-score -1.24
Structure conservation index 0.66
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6370935 95 - 27905053
-----------UCC--CAACU----U---UG--UUGUCCUCGUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUACGU---UGUUACGUGCAGAAAUUUGGAAAUCAA
-----------(((--(((.(----(---((--((((...((((...))))...))))))))))).....((((((((((......((((---....)))))))))))))))))...... ( -22.20)
>DroPse_CAF1 133600 101 - 1
C----UGC---UGC--CUGCC----U---CGUCUGGUGCUCGUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUACGU---GGUUACGUGCAGAAAUUUGGAAAUCAA
(----(((---...--..(((----.---(((..(((((....((((((((((..........)))))))....))).)).)))..))).---))).....))))............... ( -22.30)
>DroGri_CAF1 173044 114 - 1
UCACUUGAUGCGCCCGAAUCC----UGCCGA--UUGUCCUGCUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUGUGCAACUUUACGUAGUAGUUACGUGCCGAAAUUUGGAAAUCAA
.....((((....((((((..----.((((.--.....((((((.........((((.((((((.......))))))))))........))))))...)).))....))))))..)))). ( -21.73)
>DroWil_CAF1 229252 99 - 1
C----------UGU--UAUCC----UGCCGA--UUGUCCUCCUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUAUGU---AGUUACGUGCAGAAAUUUGGAAAUCAA
.----------...--.....----....((--((.(((.......(((((((..........)))))))((((((((((((((......---)))....)))))))))))))))))).. ( -22.30)
>DroAna_CAF1 135888 101 - 1
-----------ACCCGCAACUCCAGU---UG--UUGUCCUCCUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUACGU---UGCGACGUGAAGAAAUUUGGGAAUCAA
-----------....(((((....))---))--).....(((..((((.....((((..(((((.......))))).)))).((((((((---....)))))))).))))..)))..... ( -24.50)
>DroPer_CAF1 140770 101 - 1
C----UGC---UGC--CUGCC----U---CGUCUGGUGCUCGUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUACGU---GGUUACGUGCAGAAAUUUGGAAAUCAA
(----(((---...--..(((----.---(((..(((((....((((((((((..........)))))))....))).)).)))..))).---))).....))))............... ( -22.30)
>consensus
C__________UCC__CAACC____U___CG__UUGUCCUCCUGAAUUAUGCAUGCAACAAAUUGUAUAAAAAUUUCUGCAACUUUACGU___AGUUACGUGCAGAAAUUUGGAAAUCAA
..........................................(((.(((((((..........)))))))(((((((((((.....((......))....))))))))))).....))). (-14.85 = -15.38 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:44 2006