Locus 2244

Sequence ID 3R_DroMel_CAF1
Location 6,369,436 – 6,369,530
Length 94
Max. P 0.609999
window3639

overview

Window 9

Location 6,369,436 – 6,369,530
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 91.84
Mean single sequence MFE -21.15
Consensus MFE -17.94
Energy contribution -18.13
Covariance contribution 0.19
Combinations/Pair 1.04
Mean z-score -1.64
Structure conservation index 0.85
SVM decision value 0.16
SVM RNA-class probability 0.609999
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6369436 94 - 27905053
GGGAAAUGCGGAGCUGAGAAGUUGGAGUAGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA
.............(..((..((((.....(((((.((....)).))))).......((((((.((.......)).)))))).))))..))..). ( -20.40)
>DroSec_CAF1 133872 94 - 1
GGGAAAUGCGGAGCUGAGAAGUUGGAGUAGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA
.............(..((..((((.....(((((.((....)).))))).......((((((.((.......)).)))))).))))..))..). ( -20.40)
>DroSim_CAF1 157087 94 - 1
GGGAAAUGCGGAGCUGAGAAGUUGGAGUAGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA
.............(..((..((((.....(((((.((....)).))))).......((((((.((.......)).)))))).))))..))..). ( -20.40)
>DroEre_CAF1 145194 89 - 1
GGGAAAAGCGG-----AGUAGUUGGAGUUGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA
........(.(-----(((.((((.....(((((.((....)).))))).......((((((.((.......)).)))))).)))).)))).). ( -20.60)
>DroYak_CAF1 135394 89 - 1
GGGAAAAGCGG-----AGAAGUUGGAGUGGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA
.......(((.-----(((((((....(((((((.((....)).))))))).....(((.....))).....))))))).)))........... ( -26.70)
>DroAna_CAF1 134419 85 - 1
AGU-----CGG----GGGAGUUUGGAGUAGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA
.(.-----((.----((((((((......(((((.((....)).))))).......(((.....)))....)))))))).)))........... ( -18.40)
>consensus
GGGAAAUGCGG____GAGAAGUUGGAGUAGCAGAAGGAUAUCCAUUUGCCAAAAUAGCAAAACUUGCAUAAAAACUUUUGCGCAACAACUUGGA
..................((((((..((.(((((.((....)).))))).......((((((.((.......)).))))))))..))))))... (-17.94 = -18.13 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:43 2006