Locus 2243

Sequence ID 3R_DroMel_CAF1
Location 6,369,060 – 6,369,165
Length 105
Max. P 0.991114
window3638

overview

Window 8

Location 6,369,060 – 6,369,165
Length 105
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 91.90
Mean single sequence MFE -26.34
Consensus MFE -24.92
Energy contribution -25.20
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.69
Structure conservation index 0.95
SVM decision value 2.25
SVM RNA-class probability 0.991114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6369060 105 - 27905053
GCCAACAUGGCGAACAAAAGUUUUGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAGCAACAACAACAG------CA
(((.....)))........((((((((.(((((........(((....))).............((((((.......)))))).)))))))))).))).....------.. ( -28.10)
>DroSec_CAF1 133496 105 - 1
GCCAACAUGGCGAACAAAAGUUUAGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAGCAACAACAACAA------CG
(((.....)))((((....)))).(((.(((((........(((....))).............((((((.......)))))).))))))))...........------.. ( -25.70)
>DroSim_CAF1 156711 105 - 1
GCCAACAUGGCGAACAAAAGUUUUGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAGCAACAACAGCAA------CG
(((.....)))........((((((((.(((((........(((....))).............((((((.......)))))).)))))))))).))).....------.. ( -28.10)
>DroAna_CAF1 134000 99 - 1
GCCAACAUGGCGAACAAAAGUUUUGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAACAACAACU------------
(((.....)))........(((((((((((..(.((.....)).)....))..............(((((.......))))))))))).))).......------------ ( -22.80)
>DroPer_CAF1 138898 111 - 1
ACCAACAUGGCGAACAAAAGUUUUGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAGCAGCAGCAGGAACAACAACU
.((.....)).........((((((((.(((((.((.....(((....))).............((((((.......))))))....)).))))))))).))))....... ( -27.00)
>consensus
GCCAACAUGGCGAACAAAAGUUUUGCUCGCUGCGGCAAAAAGCGGAAAUGCAUUCAAAAUCUAAUAUGGCAGCCAUGGUCAUGAGCAGCAGCAACAACAACAA______CG
(((.....)))........((((((((.(((((........(((....))).............((((((.......)))))).)))))))))).)))............. (-24.92 = -25.20 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:42 2006