| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,364,890 – 6,364,989 |
| Length | 99 |
| Max. P | 0.613594 |
| Location | 6,364,890 – 6,364,989 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 82.36 |
| Mean single sequence MFE | -20.03 |
| Consensus MFE | -13.19 |
| Energy contribution | -13.63 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6364890 99 + 27905053 UUUUAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUGAAAAUAAUGGCUGCCAA----AAAAGGGGAAUAUUCCAUAUACAUAUAUGU--GUGUAUAGAGCAU-- ...................(((((.(((((((((((((....))))).....((..----....))(((....))).........)))))--)))...)))))..-- ( -20.70) >DroPse_CAF1 127321 87 + 1 UUUCAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUAAAAAUAAUGGCUGCAACUCAACGAAAGAGA------------------CAG--GCAAACGGAGCAGAA (((((.......)))))..((((.((((((...(((((....))))).)).)).......(....).))------------------.))--))............. ( -14.00) >DroSec_CAF1 129387 93 + 1 UUUUAAUUUAAAUGAAAAAGCUUUUCGCG--UAGUUAUGAAAAUAAUGGCUGCCAA----AAAGGGAGAAUAUUCCGUAU----AUAUGU--GUGUAUGGAGCAU-- ....................(((((.(.(--(((((((.......))))))))).)----))))........((((((((----((....--))))))))))...-- ( -20.30) >DroSim_CAF1 144099 95 + 1 UUUUAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUGAAAAUAAUGGCUGCCAA----AAAGGGGGAAUAUUCCGUAU----AUAUGU--GUGUAUGGAGCAU-- ...................(((((.(((((((((((((....)))))..((.((..----...)).))............----.)))))--)))...)))))..-- ( -21.60) >DroEre_CAF1 140734 95 + 1 UUUUAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUGAAAAUAAUGGCUGCCAA----AAAGGGGGGAUAUUCCAUAU----AUAUGU--GUGUAUAAAGCAU-- ...................(((((.(((((((((((((....)))))..((.((..----...)).))............----.)))))--)))...)))))..-- ( -21.80) >DroYak_CAF1 130837 97 + 1 UUUUAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUGAAAAUAAUGGCUGCCAA----AAAGGGGGGAUAUUCCAUAU----AUAUGUGUGUGUAUAAAGCAU-- ...................(((((.(((((((((((((....)))))..((.((..----...)).))............----...))))))))...)))))..-- ( -21.80) >consensus UUUUAAUUUAAAUGAAAAAGCUUUUCGCGCAUAGUUAUGAAAAUAAUGGCUGCCAA____AAAGGGGGAAUAUUCCAUAU____AUAUGU__GUGUAUAGAGCAU__ ...................(((((..((((.(((((((.......)))))))............((((....))))................))))..))))).... (-13.19 = -13.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:39 2006