Locus 224

Sequence ID 3R_DroMel_CAF1
Location 904,443 – 904,551
Length 108
Max. P 0.950675
window405

overview

Window 5

Location 904,443 – 904,551
Length 108
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 79.04
Mean single sequence MFE -22.53
Consensus MFE -12.69
Energy contribution -14.12
Covariance contribution 1.44
Combinations/Pair 1.09
Mean z-score -2.55
Structure conservation index 0.56
SVM decision value 1.40
SVM RNA-class probability 0.950675
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 904443 108 + 27905053
AUCAAUUUGUUUAGCUGGCUAAUUUCGCUUACUCGCUGGCUUUUGUUUUUGGAUAUCGAUUUGUUUU-UUGUAAGUCACAAUACGGUUGGCUAAUGCAAGUUUAUGUAC
...((((((((((((..(((......((......))((((((........(((((......))))).-....))))))......)))..))))).)))))))....... ( -22.52)
>DroPse_CAF1 76185 85 + 1
AUCAAUUUGUUUAGCUGGCUAAUUU-----------UCGCUUUUGCUUUU------------GUUU-GUUGUAAGUCACAAUAUGGUUGGCUAAUGCAAGUUUAUGUGU
...((((((((((((..((((....-----------..((....))....------------...(-(((((.....))))))))))..))))).)))))))....... ( -21.80)
>DroYak_CAF1 6754 97 + 1
AUCAAUAUAUUUAGCUGGCCAAUUU------CUCGUUGGCUUUUUGUUUUGGAU------UUGUUUUGUUUUAAGUCACAAUACGGUUGGCUAAUGCAAGCUUAUGUAC
.....(((((..((((.((......------...(((((((..((((.((((((------(((........)))))).))).))))..))))))))).)))).))))). ( -24.00)
>DroPer_CAF1 76108 85 + 1
AUCAAUUUGUUUAGCUGGCUAAUUU-----------UCGCUUUUGCUUUU------------GUUU-GUUGUAAGUCACAAUAUGGUUGGCUAAUGCAAGUUUAUGUGU
...((((((((((((..((((....-----------..((....))....------------...(-(((((.....))))))))))..))))).)))))))....... ( -21.80)
>consensus
AUCAAUUUGUUUAGCUGGCUAAUUU___________UCGCUUUUGCUUUU____________GUUU_GUUGUAAGUCACAAUACGGUUGGCUAAUGCAAGUUUAUGUAC
...((((((((((((..(((..................((....)).....................(((((.....)))))..)))..))))).)))))))....... (-12.69 = -14.12 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:06 2006