Locus 2238

Sequence ID 3R_DroMel_CAF1
Location 6,363,185 – 6,363,282
Length 97
Max. P 0.538000
window3632

overview

Window 2

Location 6,363,185 – 6,363,282
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 97.73
Mean single sequence MFE -20.65
Consensus MFE -20.10
Energy contribution -20.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.68
Structure conservation index 0.97
SVM decision value 0.01
SVM RNA-class probability 0.538000
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6363185 97 - 27905053
AGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGACACACAGAA
...((..(((.((((.....)))).)))..))((((((((............))))))))..................................... ( -20.10)
>DroSec_CAF1 127667 97 - 1
AGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGACACACAGAA
...((..(((.((((.....)))).)))..))((((((((............))))))))..................................... ( -20.10)
>DroSim_CAF1 141362 97 - 1
AGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGACACACAGAA
...((..(((.((((.....)))).)))..))((((((((............))))))))..................................... ( -20.10)
>DroEre_CAF1 138862 95 - 1
GGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGAC--ACAGAA
...((..(((.((((.....)))).)))..))((((((((............)))))))).............................--...... ( -20.10)
>DroYak_CAF1 129000 97 - 1
AGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGACACACAGAA
...((..(((.((((.....)))).)))..))((((((((............))))))))..................................... ( -20.10)
>DroAna_CAF1 128173 97 - 1
GGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACGCAGACACAGAGAC
.(.(((.(((((((.(((..((....)).)))((((((((............))))))))..................))))))).))).)...... ( -23.40)
>consensus
AGCGUUGGCGUUUGCGCCUUGCAGUCGCUGGCAAGUGAUAAAUCAUUUCAACUGUCACUUUCGAAACACAAUUUUAUCUAAACACAGACACACAGAA
...((..(((.((((.....)))).)))..))((((((((............))))))))..................................... (-20.10 = -20.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:36 2006