| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,362,475 – 6,362,567 |
| Length | 92 |
| Max. P | 0.522820 |
| Location | 6,362,475 – 6,362,567 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 86.44 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -18.79 |
| Energy contribution | -19.68 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522820 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6362475 92 - 27905053 AA----UUCGGGCGCUGAAAGUGGGGAGAAGGAAUACACUUAGCUAGAGGCUGAAAAGCAAAUGGGGUCGCCACCGA-AAUAGUGCCACUAAAAAU--A------ ..----....(((((((...((((.((.(((.......)))..(((...(((....)))...)))..)).))))...-..))))))).........--.------ ( -26.00) >DroSec_CAF1 126949 94 - 1 AA----UUCGGGCGCUGAAAGUGGGGAGAAAGAAUACACUUUGCUAGAGGCUGAAAAGCAAAUGGGGUCGGCACCGA-AAUAGUGCCACUAAAAACUAG------ ..----(((((..((((((((((.............)))))..(((...(((....)))...)))..))))).))))-).((((..........)))).------ ( -25.02) >DroSim_CAF1 140647 92 - 1 AA----UUCAGGCGCUGAAAGUGGGGAGAAAGAAUACACUUAGCUAGAGGCUGAAAAGCAAAUGGGGUCGCCACCGA-AAUAGUGCCACUAAAAAU--A------ ..----....(((((((...((((.((..(((......)))..(((...(((....)))...)))..)).))))...-..))))))).........--.------ ( -25.30) >DroEre_CAF1 138229 98 - 1 AA----UUCGGGCGCUGAAUGUGGGGAGAAAGAAUACACUUAGCUAGAGGCUGAAAAGCAAAUGGGGUCGCCACCGA-AAUAGUGCCACUAAAAAU--AGAAAAU ..----....(((((((...((((.((..(((......)))..(((...(((....)))...)))..)).))))...-..))))))).........--....... ( -25.10) >DroYak_CAF1 128372 92 - 1 AA----UUCGGGCGCUGAAUGUGGGGAGAAAGAAUACACUUAGCUAGAGGCUGAAAAGCAAAUGGGGUCGCCACCGA-AAUAGUGCCACUAAAAAU--A------ ..----....(((((((...((((.((..(((......)))..(((...(((....)))...)))..)).))))...-..))))))).........--.------ ( -25.10) >DroPer_CAF1 131984 95 - 1 CCGACGGUGGGGGGGAGAGGCGGGAGAGGAAGAAUACACUUAGCUAGAGGCAG--CGGCAAAUGGGGUCGCCACCAAAAAUAGUGCCACUAAAAAU--A------ .....(((((.(......(((..(((.(........).))).)))...((..(--((((.......)))))..))........).)))))......--.------ ( -21.20) >consensus AA____UUCGGGCGCUGAAAGUGGGGAGAAAGAAUACACUUAGCUAGAGGCUGAAAAGCAAAUGGGGUCGCCACCGA_AAUAGUGCCACUAAAAAU__A______ ..........(((((((....(((((.(((((......)))..(((...(((....)))...)))..)).)).)))....))))))).................. (-18.79 = -19.68 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:35 2006